Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68470 457 / 2e-158 Exostosin family protein (.1) AT2G20370 313 / 5e-100 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT2G29040 314 / 2e-99 Exostosin family protein (.1) AT2G32750 306 / 1e-98 Exostosin family protein (.1) AT4G13990 301 / 7e-97 Exostosin family protein (.1) AT5G62220 300 / 2e-96 ATGT18 glycosyltransferase 18 (.1) AT2G32740 291 / 2e-93 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT2G31990 289 / 2e-92 Exostosin family protein (.1) AT5G41250 286 / 2e-90 Exostosin family protein (.1) AT1G63450 277 / 6e-86 RHS8 root hair specific 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013700 [exp] 647 / 0 AT1G78560 554 / 0.0 Sodium Bile acid symporter family (.1) Lus10013701 [exp] 466 / 9e-162 AT1G68470 466 / 4e-162 Exostosin family protein (.1) Lus10010677 [exp] 318 / 3e-103 AT2G32750 497 / 7e-173 Exostosin family protein (.1) Lus10007426 [exp] 315 / 6e-102 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10016532 [exp] 313 / 5e-101 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10001028 [exp] 311 / 2e-100 AT4G13990 499 / 1e-173 Exostosin family protein (.1) Lus10001578 [exp] 313 / 4e-100 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10022862 [exp] 310 / 3e-99 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10024961 [exp] 309 / 2e-98 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G382200 [exp] 472 / 9e-164 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.001G381900 [exp] 470 / 5e-163 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 307 / 3e-98 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.014G147800 [exp] 291 / 2e-92 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.009G032500 [exp] 293 / 6e-92 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.012G130700 [exp] 286 / 5e-91 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.001G321000 [exp] 282 / 4e-89 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.015G132600 [exp] 279 / 4e-88 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.001G105300 [exp] 277 / 1e-86 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.001G120800 [exp] 228 / 2e-69 AT4G22580 593 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10005566 pacid=23139672 polypeptide=Lus10005566 locus=Lus10005566.g ID=Lus10005566.BGIv1.0 annot-version=v1.0 ATGGCCAAAGAACAGACCTTTCACTTCAAAAATACCACATTTTTGCCTAATCCACCTTACAAACTCTTAATCCTTCTCTTTCTCTTCTTTTCTCTTTGGT CTCTTCTCCTACAATCCTATAGCCGCCCCTTCCTTAGAAAGAGCAGCATCAGTAGTCGAACCGGTGATGTCGGTGCCCACATTGTAGCACCAAACGTAGT CAACCAGAACGTCGACAAAGTCAACGACTCGAAACTTGTTTCGTGTCCTCACAACATGTCTGTCTACGTCTACGACCTACCTTCCAAGTTCAATGCCGAC CTTCTCCACAATTGCGCCCATTTGAACAACTATGGCAGTATGTGTCCCCATGTTGCGAATCGCGGACTTGGCCAACCGCTTTTCCGCCGCGGGTCCGACC ATGCTGGTGATGATCAGTATGTGTGGTTTGCGACTAACCAGTTCACTGGAGAGGAGATCTTCCACTCTCGGATGGAAAACCACCCGTGTCGTTCGAAGGA CCCCTCACGTGCGAGCCTCTTCTATGTACCGTTCTATGGCGGGTTCCATATGTCGAGTAAGATGCGGGAGGTGAACCACACTGCCCGTGACGAGCTAGCT ATGCAGCTAGCCGATTACGTCAAGCTACAACCTTGGTGGCATAGACGAAATGGGAAGGATCATTTTATGGTCTTGGGCCGGACTGCATGGGATTTCATGC GTCCGGATCAGGACCGTCCTGACCGTTGGAATGACTACGGGCCTAACAACCTGTTCAGTCACCCAACGGTCAAAAATATGTCTGTGTTCGTCCTTGAGAG GCACCCGTGGCAAGGGCATAACCAACACGGGATCCCATACCCATCCTACTTCCACCCTTCCACATCCGACCAGCTCGCCCACTGGCAGCGAATCGTACAA GAATCCAAACGACCGTACCTATTCTCCTTCGTGGGAGCAAAACGAAAGGAAGGCGAATCAGCTGCCATTCGAGACGAGCTAATGAGGCAATGCTCGGATT CAAAACGATGCAACATGATCAACTGCACGACGAATCTAGCTCAGTGCAACAATCCAGCACGAGTGCTGAGAGCGATGAAGGAGTCGCAATTCTGCCTGCA GGCACGCGGCGACTCCTTCACTCGACGGTCACTGTTCGATTCCATCCTGGCCGGATGCATACCGGTGGTGTTCTCCCGACACACTGCGTACACACAGTAC GAAATGTACCTGCCGGATGATACGAGGTCGTATTCGGTGTTTATTGAAGAGGAGGAGGTGGTGGGAAGGAAGATGAATGTGGAGAAGGAACTTGAGAAGA TTGGGAGTTTGGAAGTTGGGGAGATGAGGAAAGTGGTGGTGGATTTGATTCCTAGACTTACATTTGCGCATCCGGATGCCGGTGGTGATAAAGGGTTTGA TGATGCCGTTGATGTTGCCATTTCATCGTTGCTACGAAAATTAAAATAG
AA sequence Show only first row Show all	>Lus10005566 pacid=23139672 polypeptide=Lus10005566 locus=Lus10005566.g ID=Lus10005566.BGIv1.0 annot-version=v1.0 MAKEQTFHFKNTTFLPNPPYKLLILLFLFFSLWSLLLQSYSRPFLRKSSISSRTGDVGAHIVAPNVVNQNVDKVNDSKLVSCPHNMSVYVYDLPSKFNAD LLHNCAHLNNYGSMCPHVANRGLGQPLFRRGSDHAGDDQYVWFATNQFTGEEIFHSRMENHPCRSKDPSRASLFYVPFYGGFHMSSKMREVNHTARDELA MQLADYVKLQPWWHRRNGKDHFMVLGRTAWDFMRPDQDRPDRWNDYGPNNLFSHPTVKNMSVFVLERHPWQGHNQHGIPYPSYFHPSTSDQLAHWQRIVQ ESKRPYLFSFVGAKRKEGESAAIRDELMRQCSDSKRCNMINCTTNLAQCNNPARVLRAMKESQFCLQARGDSFTRRSLFDSILAGCIPVVFSRHTAYTQY EMYLPDDTRSYSVFIEEEEVVGRKMNVEKELEKIGSLEVGEMRKVVVDLIPRLTFAHPDAGGDKGFDDAVDVAISSLLRKLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68470			Exostosin family protein (.1)		Lus10005566 [exp]	0	1
AT5G42950			GYF domain-containing protein ...		Lus10032720 [exp]	15.8	0.8763
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10004003 [exp]	15.9	0.7947
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10005140 [exp]	18.1	0.7955
AT3G55160			unknown protein		Lus10007253 [exp]	24.3	0.8647
AT1G71930	NAC	VND7, ANAC030	Arabidopsis NAC domain contain...		Lus10033281 [exp]	24.4	0.8297
AT5G24350			unknown protein		Lus10022371 [exp]	38.7	0.8461
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10023523 [exp]	39.1	0.8073
AT2G06510		ATRPA70A, ATRPA...	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10033436 [exp]	56.8	0.8364
AT3G56140			Protein of unknown function (D...		Lus10009845 [exp]	66.5	0.8036
					Lus10009498 [exp]	71.7	0.8327

Compare expression of checked genes

Lus10005566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.