Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68470 290 / 3e-95 Exostosin family protein (.1) AT2G32750 187 / 4e-55 Exostosin family protein (.1) AT4G13990 180 / 3e-52 Exostosin family protein (.1) AT2G29040 181 / 2e-51 Exostosin family protein (.1) AT2G32740 171 / 3e-49 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT2G20370 171 / 3e-48 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT5G41250 168 / 2e-47 Exostosin family protein (.1) AT2G31990 164 / 1e-46 Exostosin family protein (.1) AT1G63450 166 / 5e-46 RHS8 root hair specific 8 (.1) AT5G62220 162 / 2e-45 ATGT18 glycosyltransferase 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013701 [exp] 462 / 9e-163 AT1G68470 466 / 4e-162 Exostosin family protein (.1) Lus10005566 [exp] 282 / 9e-92 AT1G68470 457 / 1e-158 Exostosin family protein (.1) Lus10013700 [exp] 270 / 6e-84 AT1G78560 554 / 0.0 Sodium Bile acid symporter family (.1) Lus10001028 [exp] 183 / 3e-53 AT4G13990 499 / 1e-173 Exostosin family protein (.1) Lus10007426 [exp] 182 / 8e-53 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10022862 [exp] 179 / 3e-51 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10010677 [exp] 177 / 4e-51 AT2G32750 497 / 7e-173 Exostosin family protein (.1) Lus10024961 [exp] 179 / 6e-51 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10016532 [exp] 174 / 1e-49 AT2G29040 546 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G382200 [exp] 299 / 2e-98 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.001G381900 [exp] 295 / 1e-96 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.014G147800 [exp] 187 / 1e-54 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 180 / 1e-51 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.009G032500 [exp] 169 / 4e-47 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 163 / 1e-45 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.001G105300 [exp] 162 / 3e-45 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.012G130700 [exp] 150 / 3e-41 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.015G132600 [exp] 145 / 5e-39 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.001G120800 [exp] 128 / 2e-33 AT4G22580 593 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10005567 pacid=23139626 polypeptide=Lus10005567 locus=Lus10005567.g ID=Lus10005567.BGIv1.0 annot-version=v1.0 ATGCAGAAATTTGCTGAGATCGGAGATTCAAGCCCCAACTATACATCTCCTATCTCTTCGCTCTCCTCTTCCTCTCCCACCACTTCCATTGCTCCTCCAT CGCCGACGACCGGCCGAGACCCTCCACCTGCCGCCGGACCTCCCTTTGGTGTACATTTACCACCTCCCCTCCGAATTCAACTCCGGCCTCCTCCACGACT GCGCCCACTTGAACTCCTACACCGACATGTGCCCTTACGTGGCGAACCACGGACTGTGCCACTATTGGCCGAATCCGCCACGTGGTTCGCCACTCATCAG TTCATCGGCGAGATGACCTTCCACGCCAGGATGGAAAACCATCCTTGTCGCACGGTGAACCCCACCGTAGCGGAACTTTTCTACATCCCGTTTTACGGCG GGCTCCACCAGTCCAGCAAGGCGAGGGAAAATAATCTCACTGTACGTGACCAGCTGGCAGTCCAGCTGGATCAACACCTCGTCTGGCTGAGTAAGCGACA AGGTAGGGACCACTTTCTGGTTCTGGGCCGGACCGCGTGGGATTTCATGAGGAGTGATAATGATGGTGGGTCGGATTACGGGGCTAATGGGCTGTTGAGG CTGATGGCGTTAAGGAACGTGACGGTGCTGACGGTGGAGAGGCAGCCGTGGGAAGGAGGTGAAAGGCAAATGGGGATTCCGTACCCTTCTTACTTCCATC CGTTTAACGTTGACCAGTTCATGACGTGGCAGAAGGAAGTGAACGGGTTGAGGCGGCCGTATCTGTGGTCGTTCATCGGAGCGCCGCGGAAGGGCGGAGA GATCGCTGCCGTGAGGGAGGAGCTGCGGCAGTGCTATGAGTCGAGGAAGTGTACGCTGGTGAATTGTACGATGAGTGAAGAGAATGGGGATAGATTCAAG TGCCATGATCCTAAGGAAGTCGTCAAAGCACCGGGGGACTCTCACACACGGCCGTCGACGTTCGACGCGGTGCTGACAGTGTGCATTCCAGTGTTCTTCT CCCGCCACACGGCGTACTCGCAGTACTAG
AA sequence Show only first row Show all	>Lus10005567 pacid=23139626 polypeptide=Lus10005567 locus=Lus10005567.g ID=Lus10005567.BGIv1.0 annot-version=v1.0 MQKFAEIGDSSPNYTSPISSLSSSSPTTSIAPPSPTTGRDPPPAAGPPFGVHLPPPLRIQLRPPPRLRPLELLHRHVPLRGEPRTVPLLAESATWFATHQ FIGEMTFHARMENHPCRTVNPTVAELFYIPFYGGLHQSSKARENNLTVRDQLAVQLDQHLVWLSKRQGRDHFLVLGRTAWDFMRSDNDGGSDYGANGLLR LMALRNVTVLTVERQPWEGGERQMGIPYPSYFHPFNVDQFMTWQKEVNGLRRPYLWSFIGAPRKGGEIAAVREELRQCYESRKCTLVNCTMSEENGDRFK CHDPKEVVKAPGDSHTRPSTFDAVLTVCIPVFFSRHTAYSQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68470			Exostosin family protein (.1)		Lus10005567 [exp]	0	1
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10037483 [exp]	3.5	0.9504
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	5.8	0.9709
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	6.0	0.9695
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	7.1	0.9694
AT1G57790			F-box family protein (.1)		Lus10004476 [exp]	11.4	0.9543
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	11.5	0.9627
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021435 [exp]	12.3	0.9669
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10012228 [exp]	13.4	0.9332
AT5G60330			unknown protein		Lus10018274 [exp]	13.8	0.9657
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10016284 [exp]	15.7	0.9652

Compare expression of checked genes

Lus10005567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.