Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53510 809 / 0 ATMPK18 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) AT3G14720 801 / 0 ATMPK19 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) AT2G42880 741 / 0 ATMPK20 MAP kinase 20 (.1) AT5G19010 675 / 0 ATMPK16 mitogen-activated protein kinase 16 (.1) AT1G73670 659 / 0 ATMPK15 MAP kinase 15 (.1) AT3G18040 654 / 0 ATMPK9 MAP kinase 9 (.1.2) AT1G18150 642 / 0 ATMPK8 Protein kinase superfamily protein (.1.2.3) AT2G01450 611 / 0 ATMPK17 MAP kinase 17 (.1.2.3.4) AT4G01370 341 / 3e-112 ATMPK4 MAP kinase 4 (.1) AT4G11330 338 / 5e-111 ATMPK5 MAP kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013702 [exp] 1115 / 0 AT1G53510 845 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10038956 [exp] 658 / 0 AT3G18040 817 / 0.0 MAP kinase 9 (.1.2) Lus10041234 [exp] 655 / 0 AT5G19010 911 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10021945 [exp] 641 / 0 AT5G19010 912 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10021784 [exp] 630 / 0 AT1G73670 706 / 0.0 MAP kinase 15 (.1) Lus10027248 [exp] 617 / 0 AT3G18040 741 / 0.0 MAP kinase 9 (.1.2) Lus10034601 [exp] 532 / 0 AT1G73670 597 / 0.0 MAP kinase 15 (.1) Lus10027091 [exp] 345 / 2e-113 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10008339 [exp] 345 / 2e-113 AT2G43790 691 / 0.0 MAP kinase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G381300 [exp] 894 / 0 AT3G14720 875 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.011G102500 [exp] 885 / 0 AT3G14720 874 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.002G059900 [exp] 798 / 0 AT2G42880 897 / 0.0 MAP kinase 20 (.1) Potri.005G201800 [exp] 795 / 0 AT2G42880 904 / 0.0 MAP kinase 20 (.1) Potri.010G029700 [exp] 693 / 0 AT5G19010 921 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.008G200800 [exp] 687 / 0 AT5G19010 922 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.012G048600 [exp] 670 / 0 AT3G18040 793 / 0.0 MAP kinase 9 (.1.2) Potri.015G040300 [exp] 664 / 0 AT3G18040 767 / 0.0 MAP kinase 9 (.1.2) Potri.010G112200 [exp] 642 / 0 AT1G73670 687 / 0.0 MAP kinase 15 (.1) Potri.008G130000 [exp] 634 / 0 AT1G73670 697 / 0.0 MAP kinase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10005568 pacid=23139648 polypeptide=Lus10005568 locus=Lus10005568.g ID=Lus10005568.BGIv1.0 annot-version=v1.0 ATGCAGCAAGACCACCCTAGGAAGGATTTGAAAGACATGGAGTTCTTCACCGAGTATGGTGATGCCAATAGATATAAGCTTTTGGAGGTCATAGGTATAG GAAGCTATGGAGTTGTTTGTGCGGCAATCGACACTCACACGGGTGAAAAAGTGGCTATAAAGAAGATACACGATGTCTTTGAGCACATCTCGGATGCGAT TCGGATTTTGAGAGAAGTCAAGTTGCTTAGGCTGTTGCGGCACCCTGACATCGTTGAAATTAAGCGGATTATGCTACCCCCTTCAAAGAGGGAGTTCAGA GACATTTTTGTTGTTTTTGAGCTCATGGAGTCTGATCTTCATCAGGTCATCAAAGCTAATGATGACCTGACGCGCGAACATCACCAGTTTTTCCTTTATC AAATGCTGCGTGCATTAAAGTATATGCATACAGCGAATGTGTACCATAGAGATCTTAAGCCCAAGAACATATTGGCAAATGCCAACTGCAAATTGAAAAT ATGCGACTTTGGATTAGCAAGAGTTGCATTTACCGATACGCCAACTACAGTTTTTTGGACGGATTATGTAGCCACCAGATGGTATAGAGCGCCTGAGCTT TGTGGATCTTTCTCTTCGAAGTATACTCCAGCAATTGATATTTGGAGCATTGGTTGTATCTTTGCGGAGGTGTTGACAGGGAAGCCACTGTTCCCTGGTA AAAGTGTAGTCCACCAATTGGAACTAATCACTGATCTTCTGGGGACTCCATCAATGGATACCATTTCCGGGGTGAGAAATGATAAAGCGAGGAAGTATTT AACTGAAATGAGGAAGAAACAGCCTGTGCCATTTGCACAGAAGTTCCCAACTGCGGATCCTTTAGCACTTCGTCTTCTTCAAAGGCTGTTAGCATTTGAT CCTAAGGATAGACCGACTGCTGAGGAGGCGCTTGCGGACCCTTACTTCAGGGGCCTCTCCAAAATTGAGAGAGAACCTTCTTGTCAGCCTATCTCAAAGT TGGAGTTTGAGTTTGAAAGGAGAAGGGTGACAAAGGATGACGTAAGGGAGCTTCTTTATCGAGAAATACTGGAGTATCATCCACAATTGTTGAAAGATTA TATGAGTGGAAATGAAGGCACCAATTTCCTCTATCCTAGTGCGATAGGTCATTTCAGAAAGCAGTTTGCATATCTTGAAGAGAATAGTGGTCGGAGTGCA CCAGTCATTCCTCTGGAGCGGAAACACGTCTCTCTCCCTCGGCCGACGGTTCATGCTTCAACTATGCCTCATAACATGCCAAGTTCAGCATCAGTTGACA ACCATCAAGTAACAGATGAAGTCCCGAAAAACTTTCGAGGAACTGAGAGTAATCCTGGAAATGCATCCAGGACTCTCCGGCCTCCGCCAAGAGGGCCAGC AGGCAATGCAGCGAAGCCGGGGAGAGTGGTGGGATCATTTGTGCAATGTGACGGCAACAGAAACGTGAAAGACGGCTATCTGTACAGGAACTCCATCCTT CCTTCACAGACGACCGCCACAGCATCGCCACCGTGCTTCTTCAGGACGAACTCCGCAACAAGAGATAGGGACAACTTGTCACATGGGAGACCGCTGCCTC ATCAGTCGATGGTCTCGACGGCTTCAGCGACAAAGCAGCCGGTAGTTGCCGGAATGGTTGCGGACATGAACACCAATCCATACTACCAACAGGCAAGGGT GGTCGAGCATCAGCAGCAGCAGATGAATGAGAGAATTGCGATTGATGCGAAACTGATACAGGCGCAGGCTCATTATGGACCTGCTGGTGCGGCTGCGATA GCTGTTGCGGCACATAGGAATGTTGGGACTGTTCATTATGGGATGTCTTAG
AA sequence Show only first row Show all	>Lus10005568 pacid=23139648 polypeptide=Lus10005568 locus=Lus10005568.g ID=Lus10005568.BGIv1.0 annot-version=v1.0 MQQDHPRKDLKDMEFFTEYGDANRYKLLEVIGIGSYGVVCAAIDTHTGEKVAIKKIHDVFEHISDAIRILREVKLLRLLRHPDIVEIKRIMLPPSKREFR DIFVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFTDTPTTVFWTDYVATRWYRAPEL CGSFSSKYTPAIDIWSIGCIFAEVLTGKPLFPGKSVVHQLELITDLLGTPSMDTISGVRNDKARKYLTEMRKKQPVPFAQKFPTADPLALRLLQRLLAFD PKDRPTAEEALADPYFRGLSKIEREPSCQPISKLEFEFERRRVTKDDVRELLYREILEYHPQLLKDYMSGNEGTNFLYPSAIGHFRKQFAYLEENSGRSA PVIPLERKHVSLPRPTVHASTMPHNMPSSASVDNHQVTDEVPKNFRGTESNPGNASRTLRPPPRGPAGNAAKPGRVVGSFVQCDGNRNVKDGYLYRNSIL PSQTTATASPPCFFRTNSATRDRDNLSHGRPLPHQSMVSTASATKQPVVAGMVADMNTNPYYQQARVVEHQQQQMNERIAIDAKLIQAQAHYGPAGAAAI AVAAHRNVGTVHYGMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53510		ATMPK18	ARABIDOPSIS THALIANA MAP KINAS...		Lus10005568 [exp]	0	1
AT1G53510		ATMPK18	ARABIDOPSIS THALIANA MAP KINAS...		Lus10013702 [exp]	1.0	0.8986
AT3G59910			Ankyrin repeat family protein ...		Lus10005306 [exp]	4.2	0.7306
AT2G36330			Uncharacterised protein family...		Lus10042123 [exp]	5.2	0.7926
AT1G16250			Galactose oxidase/kelch repeat...		Lus10002112 [exp]	6.8	0.7944
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Lus10029517 [exp]	10.0	0.6937
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10030251 [exp]	14.1	0.7420
AT1G19310			RING/U-box superfamily protein...		Lus10010791 [exp]	16.1	0.7277
AT5G44005			unknown protein		Lus10003610 [exp]	16.2	0.7420
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10018489 [exp]	16.7	0.7393
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10013235 [exp]	20.8	0.6689

Compare expression of checked genes

Lus10005568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.