Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78530 430 / 8e-152 Protein kinase superfamily protein (.1) AT1G31420 259 / 6e-82 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT2G35620 254 / 4e-80 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2) AT5G62710 240 / 1e-74 Leucine-rich repeat protein kinase family protein (.1) AT1G55610 218 / 7e-64 BRL1 BRI1 like (.1.2) AT2G01950 218 / 9e-64 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT3G13380 214 / 2e-62 BRL3 BRI1-like 3 (.1) AT5G07280 211 / 2e-61 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G62230 209 / 4e-61 ERL1 ERECTA-like 1 (.1.2) AT5G07180 206 / 8e-60 ERL2 ERECTA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033104 [exp] 258 / 3e-81 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036672 [exp] 256 / 2e-80 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034753 [exp] 255 / 4e-80 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10033291 [exp] 233 / 2e-69 AT1G31420 769 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10014996 [exp] 222 / 6e-65 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10038875 [exp] 218 / 8e-64 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10017267 [exp] 211 / 1e-61 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10031689 [exp] 211 / 2e-61 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10013562 [exp] 209 / 1e-60 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G380800 [exp] 445 / 1e-157 AT1G78530 535 / 0.0 Protein kinase superfamily protein (.1) Potri.001G129000 [exp] 247 / 3e-77 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.012G071100 [exp] 245 / 2e-76 AT5G62710 943 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G105000 [exp] 243 / 1e-75 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.012G139000 [exp] 226 / 2e-66 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G101100 [exp] 225 / 2e-66 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.011G101900 [exp] 205 / 2e-66 AT1G78530 210 / 2e-68 Protein kinase superfamily protein (.1) Potri.008G140500 [exp] 224 / 5e-66 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.015G141200 [exp] 219 / 4e-64 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G472900 [exp] 218 / 7e-64 AT1G55610 1485 / 0.0 BRI1 like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10005569 pacid=23139640 polypeptide=Lus10005569 locus=Lus10005569.g ID=Lus10005569.BGIv1.0 annot-version=v1.0 ATGGGCAAAGCTCATATCACCATTGCATTCTACATCACTATCTGCTGCCTAGCTTTCATCCTCTCCAAGATCTTCATCTCCTTCCTCCTCTACAAGCGAT GGAAGAGGAAGCACTCTGTTCATCATCAAGACCCCCATTTCTCAGGAGGCTACGGCACAGTCTACAAACTCTCACTCAACGACTCCCTCTCCTTCGCGGT GAAGCGGCTCAACAGAGGCACACCGGATCGAGAGCGAGGGTTCGAGAGGGAACTCGAAGCCATGGGAGACATCAAGCACAGAAACATTGTTACACTCCAT GGATACTTCACTAATCCTCACTACAACTTGCTGATCTACGAGCTGATGCCCAATGGGAGCCTCGACGGGTTCCTTCATCACGGCAAGAGCAATGATGATG TGAAGAAGCTGGATTGGGAATGTAGGTACAGGATTGCAATTGGTGCTGCTAGAGGGATTGCTTATCTGCATCATGATTGCATCCCTCACATTATACATAG GGATATCAAGTCGAGTAATATTCTGCTGGATCGGAATATGGAGGCTAGGATTTCGGATTTCGGGTTGGCTACTTTGATGGAGCCTGATCAGACCCATGTC TCCACTTTCGTTGCTGGTACTTTTGGCTACTTGCCTCCAGAGTGCTTCGACACAGGGAAAGCAACCGCAAAAGGAGACGTCTACAGCTTCGGAGTTGTCC TGCTGGAGATTCTAACAGGAAGGAAGCCAACAGATGAATCTTTCTTTGAGGAAGGGACCAAGCTTGTTACTTGGGTGAAAGGAGTGGTGGAAGACAAGAA GAGAGCAGAGTACGTAGTTGACAGCAGCTTGAAGTGCAGCAATGGCGACTGTCATGAGAAGAACATGGACGAGATCAATGGCGTATTCGGAATCGCGTTC ATGTGCCTCGAACAGGATCCTTCCGTTAGACCGACCATGGCCGAGGTTGTTAAGATGCTAGAACTCGTTAGATGTTAA
AA sequence Show only first row Show all	>Lus10005569 pacid=23139640 polypeptide=Lus10005569 locus=Lus10005569.g ID=Lus10005569.BGIv1.0 annot-version=v1.0 MGKAHITIAFYITICCLAFILSKIFISFLLYKRWKRKHSVHHQDPHFSGGYGTVYKLSLNDSLSFAVKRLNRGTPDRERGFERELEAMGDIKHRNIVTLH GYFTNPHYNLLIYELMPNGSLDGFLHHGKSNDDVKKLDWECRYRIAIGAARGIAYLHHDCIPHIIHRDIKSSNILLDRNMEARISDFGLATLMEPDQTHV STFVAGTFGYLPPECFDTGKATAKGDVYSFGVVLLEILTGRKPTDESFFEEGTKLVTWVKGVVEDKKRAEYVVDSSLKCSNGDCHEKNMDEINGVFGIAF MCLEQDPSVRPTMAEVVKMLELVRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78530			Protein kinase superfamily pro...		Lus10005569 [exp]	0	1
AT3G62110			Pectin lyase-like superfamily ...		Lus10038030 [exp]	3.3	0.8729
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10039895 [exp]	5.7	0.8628
AT3G62110			Pectin lyase-like superfamily ...		Lus10009972 [exp]	6.2	0.8726
AT1G71380		ATCEL3 ,ATGH9B3	ARABIDOPSIS THALIANA GLYCOSYL ...		Lus10025880 [exp]	8.0	0.8105
AT5G58300			Leucine-rich repeat protein ki...		Lus10019113 [exp]	8.1	0.8186
AT1G80690			PPPDE putative thiol peptidase...		Lus10042454 [exp]	8.7	0.8490
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10033302 [exp]	8.9	0.8215
AT1G66830			Leucine-rich repeat protein ki...		Lus10017611 [exp]	10.6	0.8544
AT1G30630			Coatomer epsilon subunit (.1)		Lus10003497 [exp]	11.0	0.8272
AT5G16730			Plant protein of unknown funct...		Lus10020373 [exp]	12.6	0.8072

Compare expression of checked genes

Lus10005569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.