Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78510 565 / 0 SPS1 solanesyl diphosphate synthase 1 (.1.2) AT1G17050 558 / 0 SPS2 solanesyl diphosphate synthase 2 (.1) AT2G34630 234 / 5e-73 GPPS, GPS1 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) AT4G36810 133 / 5e-35 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 124 / 7e-32 Terpenoid synthases superfamily protein (.1) AT3G20160 119 / 3e-30 Terpenoid synthases superfamily protein (.1) AT2G18640 119 / 3e-30 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT3G14510 117 / 4e-30 Polyprenyl synthetase family protein (.1) AT3G32040 112 / 2e-27 Terpenoid synthases superfamily protein (.1) AT2G23800 107 / 9e-26 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013703 [exp] 810 / 0 AT1G78510 542 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10042491 [exp] 642 / 0 AT1G17050 548 / 0.0 solanesyl diphosphate synthase 2 (.1) Lus10023287 [exp] 242 / 3e-76 AT2G34630 541 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Lus10022499 [exp] 126 / 1e-32 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10016803 [exp] 123 / 2e-31 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028509 [exp] 117 / 3e-29 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017624 [exp] 111 / 1e-26 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 108 / 5e-26 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017625 [exp] 107 / 1e-25 AT4G36810 423 / 5e-148 geranylgeranyl pyrophosphate synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G380500 [exp] 610 / 0 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.011G101301 [exp] 447 / 2e-156 AT1G17050 427 / 2e-148 solanesyl diphosphate synthase 2 (.1) Potri.011G099500 [exp] 434 / 4e-151 AT1G78510 415 / 8e-144 solanesyl diphosphate synthase 1 (.1.2) Potri.011G101200 [exp] 415 / 3e-144 AT1G17050 397 / 2e-137 solanesyl diphosphate synthase 2 (.1) Potri.010G138800 [exp] 235 / 3e-73 AT2G34630 551 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Potri.006G135300 [exp] 234 / 6e-73 AT2G34630 592 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Potri.004G090600 [exp] 129 / 1e-33 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.005G127100 [exp] 125 / 2e-32 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 124 / 7e-32 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 120 / 1e-30 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00348 [flax] [poplar] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Lus10005570 pacid=23139628 polypeptide=Lus10005570 locus=Lus10005570.g ID=Lus10005570.BGIv1.0 annot-version=v1.0 ATGGCGTCATTGACATGCCATAATCTTACAACCGTGGTGGGTTGCGCCGCCTCATCTTGGAGTGAAGCTAGGTGTTCATGGTGGAACAGACTGGAGAACT CTGTTTCAATCTCCAATGGCGGAATCCACCGTACTGGAAGGCTGGTCGCTTCCTGCCTTGACTCTGCTCGCTGTAGAAGCGTTTCGACAAAGAGCGCCGA CGCTCAGCTCAGTGTTTCTCCAGGAGCTTCAGATGTCTTGTTGAATGTGAAAAGAGGTCAGATTTCGTTGACGAAATTGTTTGAAGTGGTAGCTGAGGAC CTGCTGATCCTTAACCAAAATCTTAAAACAATTGTTGGTGCAGAGAACCCAGTTTTGATGTCTGCAGCGGAGCAGATATTTGGTGCCGGAGGGAAGAGAA TGCGACCGGCTCTCGTGTTCCTGGTGTCAAGAGCTACAGCTCAGATGTCCGGTTTAAAGGAACTTACAACAAATCACCAACGTCTTGCAGAGATCATTGA GATGATCCATACAGCAAGTCTTATTCATGATGATGTATTGGATGAAAGTGACTTGAGAAGGGGGAAGGAAACCGTTCATCAACTTTACGGCACGAGAGTC GCAGTACTTGCAGGAGACTTTATGTTTGCTCAGTCATCATGGTACTTAGCGAACCTCGAAAACCTCGAAGTCATCAAACTCATCAGCCAGGTTATCAAAG ATTTCGCCAGTGGCGAAATAAAGCAAGCATCCAACTTGTTCGACTGTGACACCGAGCTCGAAGAGTACTTGATCAAGAGCTACTACAAGACAGCATCTTT AGTTGCGGCCAGCACCAAAGGAGCAGCCATTTTCAGCGGAATGGACAGCAATGTAGCCCAGTGCATGTTCGAATACGGAAAGAACCTAGGCTTATCGTTC CAGGTCGTGGATGACATACTTGATTTCACACAATCGGCCGAGCAGCTTGGAAAACCTGCTGGAAGCGACCTGGCAAAGGGGAACCTAACCGCACCAGTCA TATTTGCTCTGGAGAAAGAGCCTAAACTTAGAGAAATCATCGAGTCTGAATTCGTAGATGAAGGTTCGCTGCAAGAGGCTATCGAGTTGGTGAAGAGATC CGGGGGGATTCAGAGAGCTCAGGAACTAGCGAGAGAGAAAGCCGACGTTGCTATCCAGAACCTCGAGTGTCTTCCTCGAAGCACCTTTCGGTCTGCTCTC GAGGAAATGGTGCTGTATAATCTCGAAAGGATCGAGTGA
AA sequence Show only first row Show all	>Lus10005570 pacid=23139628 polypeptide=Lus10005570 locus=Lus10005570.g ID=Lus10005570.BGIv1.0 annot-version=v1.0 MASLTCHNLTTVVGCAASSWSEARCSWWNRLENSVSISNGGIHRTGRLVASCLDSARCRSVSTKSADAQLSVSPGASDVLLNVKRGQISLTKLFEVVAED LLILNQNLKTIVGAENPVLMSAAEQIFGAGGKRMRPALVFLVSRATAQMSGLKELTTNHQRLAEIIEMIHTASLIHDDVLDESDLRRGKETVHQLYGTRV AVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASNLFDCDTELEEYLIKSYYKTASLVAASTKGAAIFSGMDSNVAQCMFEYGKNLGLSF QVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALEKEPKLREIIESEFVDEGSLQEAIELVKRSGGIQRAQELAREKADVAIQNLECLPRSTFRSAL EEMVLYNLERIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10005570 [exp]	0	1
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10013703 [exp]	1.0	0.8935
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10022216 [exp]	1.4	0.8630
AT4G16563			Eukaryotic aspartyl protease f...		Lus10008513 [exp]	2.8	0.8475
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10004812 [exp]	5.5	0.8177
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10010665 [exp]	7.0	0.7238
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042874 [exp]	7.5	0.8141
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10032938 [exp]	9.5	0.7895
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Lus10037808 [exp]	12.2	0.8513
AT5G50100			Putative thiol-disulphide oxid...		Lus10004232 [exp]	12.4	0.8228
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Lus10021349 [exp]	13.4	0.7779

Compare expression of checked genes

Lus10005570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.