Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53530 214 / 5e-72 Peptidase S24/S26A/S26B/S26C family protein (.1.2) AT1G23465 152 / 8e-48 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G29960 147 / 2e-45 AGL64 Peptidase S24/S26A/S26B/S26C family protein (.1) AT3G08980 84 / 7e-21 Peptidase S24/S26A/S26B/S26C family protein (.1) AT2G30440 60 / 4e-11 Plsp2B, TPP plastidic type I signal peptidase 2B, thylakoid processing peptide (.1) AT1G06870 59 / 1e-10 Plsp2A plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) AT3G24590 58 / 2e-10 PLSP1 plastidic type i signal peptidase 1 (.1) AT2G31140 50 / 1e-07 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G06200 49 / 3e-07 Peptidase S24/S26A/S26B/S26C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013703 [exp] 325 / 6e-109 AT1G78510 542 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10025393 [exp] 176 / 1e-56 AT1G53530 169 / 3e-54 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10033448 [exp] 147 / 3e-46 AT1G53530 110 / 1e-32 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10015755 [exp] 119 / 1e-34 AT1G53530 86 / 4e-22 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10015272 [exp] 114 / 4e-32 AT1G53530 111 / 4e-31 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10036985 [exp] 95 / 6e-23 AT2G44220 218 / 7e-65 Protein of Unknown Function (DUF239) (.1) Lus10002492 [exp] 85 / 3e-21 AT3G08980 191 / 5e-63 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10004822 [exp] 83 / 3e-20 AT3G08980 190 / 9e-63 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10022921 [exp] 64 / 7e-13 AT2G31140 282 / 1e-97 Peptidase S24/S26A/S26B/S26C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G380400 [exp] 214 / 3e-72 AT1G53530 227 / 3e-77 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.007G071400 [exp] 184 / 4e-60 AT1G53530 194 / 7e-64 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.005G092900 [exp] 170 / 2e-54 AT1G53530 189 / 5e-62 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.016G115100 [exp] 90 / 6e-23 AT3G08980 204 / 3e-68 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.014G036400 [exp] 61 / 3e-11 AT1G06870 377 / 8e-130 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.006G157900 [exp] 54 / 5e-09 AT3G24590 357 / 5e-124 plastidic type i signal peptidase 1 (.1) Potri.002G079600 [exp] 53 / 5e-09 AT3G24590 177 / 3e-55 plastidic type i signal peptidase 1 (.1) Potri.018G081800 [exp] 52 / 3e-08 AT3G24590 372 / 3e-130 plastidic type i signal peptidase 1 (.1) Potri.005G225100 [exp] 49 / 2e-07 AT2G31140 274 / 2e-94 Peptidase S24/S26A/S26B/S26C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0299 [flax] [poplar] Peptidase_SF PF10502 [flax] [poplar] Peptidase_S26 Signal peptidase, peptidase S26 CL0299 [flax] [poplar] Peptidase_SF PF00717 [flax] [poplar] Peptidase_S24 Peptidase S24-like
Representative CDS sequence Show only first row Show all	>Lus10005571 pacid=23139641 polypeptide=Lus10005571 locus=Lus10005571.g ID=Lus10005571.BGIv1.0 annot-version=v1.0 ATGAGCTACTTCAACCAATGGTCATCCTTTGCACAAGACACCACAGCCAAAGCTTCAATCGCCGCCAAGTTCCTCTCTTTCCTTCACATTACTGATTCCT ACATAGTCTCCACCACTCTCGTTCAGGGGCCTAGCATGCTCCCCACATTGAATTACTCAGGCGATGTGCTTCTGATTGAACACTTGTCTCACCGGTTGGG GAAGCTTGAACCTGGAGACATTGTTCTTGTTCGATCCCCGGTCGAACCCAGAAAGATTGTGGCTAAACGAATAGTTGGGATGGAAGGTGATCGCGTCACT TTCCTCACTGACCCTTCCCGCAGTGAGAATTCCCTCACTGTCTTGGTTCCAAAAGGGCATGTTTGGATTCAGGGGGACAATGTGTATGCTTCTGCTGATT CGAGATATTTCGGTCCTGTTCCGTATGGTTTGATTCAAGGAAGAGCTTTTTTAAGGGTGACCATATCTTTCTTTCCTCTTTGCAGAGTATCTTTACGTGA TTTCTTATTCTAA
AA sequence Show only first row Show all	>Lus10005571 pacid=23139641 polypeptide=Lus10005571 locus=Lus10005571.g ID=Lus10005571.BGIv1.0 annot-version=v1.0 MSYFNQWSSFAQDTTAKASIAAKFLSFLHITDSYIVSTTLVQGPSMLPTLNYSGDVLLIEHLSHRLGKLEPGDIVLVRSPVEPRKIVAKRIVGMEGDRVT FLTDPSRSENSLTVLVPKGHVWIQGDNVYASADSRYFGPVPYGLIQGRAFLRVTISFFPLCRVSLRDFLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10005571 [exp]	0	1
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10027965 [exp]	20.0	0.7892
AT1G54920			unknown protein		Lus10004472 [exp]	50.3	0.8039
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10029574 [exp]	51.8	0.7876
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10038903 [exp]	53.9	0.7963
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10007869 [exp]	54.3	0.7764
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10031501 [exp]	103.4	0.7577
AT4G23660		ATPPT1	polyprenyltransferase 1 (.1.2....		Lus10033224 [exp]	107.1	0.7830
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10013402 [exp]	115.7	0.7687
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10040933 [exp]	141.4	0.7430
AT1G63500			Protein kinase protein with te...		Lus10001998 [exp]	144.3	0.7654

Compare expression of checked genes

Lus10005571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.