Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29970 45 / 4e-06 RPL18AA 60S ribosomal protein L18A-1 (.1.2.3) AT1G53560 43 / 3e-05 Ribosomal protein L18ae family (.1) AT3G14595 39 / 0.0003 Ribosomal protein L18ae family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013704 [exp] 187 / 1e-60 AT1G29970 89 / 1e-22 60S ribosomal protein L18A-1 (.1.2.3) Lus10026193 [exp] 58 / 7e-11 AT1G17080 87 / 3e-22 Ribosomal protein L18ae family (.1) Lus10042474 [exp] 57 / 9e-10 AT1G53560 85 / 1e-20 Ribosomal protein L18ae family (.1) Lus10042485 [exp] 44 / 5e-06 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1) Lus10005580 [exp] 44 / 2e-05 AT1G17080 190 / 2e-62 Ribosomal protein L18ae family (.1) Lus10028130 [exp] 41 / 0.0002 AT1G29970 150 / 6e-45 60S ribosomal protein L18A-1 (.1.2.3) Lus10013712 [exp] 40 / 0.0003 AT1G17080 186 / 6e-61 Ribosomal protein L18ae family (.1) Lus10026180 [exp] 40 / 0.0005 AT1G29970 63 / 7e-12 60S ribosomal protein L18A-1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G380200 [exp] 39 / 0.0006 AT1G17080 127 / 3e-38 Ribosomal protein L18ae family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005572 pacid=23139651 polypeptide=Lus10005572 locus=Lus10005572.g ID=Lus10005572.BGIv1.0 annot-version=v1.0 ATGGTGGAACAAAACACTACTATTGCACACGGCAGTCACCAGTACCCTCAGCCGCCGCCGCCCCAATTTCCTCCTCCTCCTCCTCCTCCTCCCTCTGCTC CGATCAGTCCTCCCCAACCCCAACCTGAACCTCAACAGCCTCCGCCGGCGGCAGCGGTGGGGCAAAGCAATGGTATGCCAAACGAGCAGTGTGTGGATGG GAGTCCTGCGATAGGGTATCCTTACAATCCTCAACAGCACTACCAAACATCCGAACACCAATCATTGTCGACGGTGACGGCGAATGTGTACATGAACTCT GCCCAAGCGATCCCTGTATCTATGTCAACTGTTGCTGTTATTAAAGGCCCTCCCGACCTTCCTTGCTGCGGAATTGGCCTTGGCTGGTTCCTGTTCATAC TGGGATTCTTCTTTGGACTGCCATGGTATATTGGAGCTGGAGCTCTTCTCTGTTCCAAGTACGACCGCCGGGAGAGGCCTGGTTACATTGGTTGCGCCGT TCTTGCAGTGATTTTTACGATTTTGATCATCATTAGCTCAACTCGATCGGGCGGGTCTTCGTCGTCATATTAA
AA sequence Show only first row Show all	>Lus10005572 pacid=23139651 polypeptide=Lus10005572 locus=Lus10005572.g ID=Lus10005572.BGIv1.0 annot-version=v1.0 MVEQNTTIAHGSHQYPQPPPPQFPPPPPPPPSAPISPPQPQPEPQQPPPAAAVGQSNGMPNEQCVDGSPAIGYPYNPQQHYQTSEHQSLSTVTANVYMNS AQAIPVSMSTVAVIKGPPDLPCCGIGLGWFLFILGFFFGLPWYIGAGALLCSKYDRRERPGYIGCAVLAVIFTILIIISSTRSGGSSSSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10005572 [exp]	0	1
AT1G06930			unknown protein		Lus10025251 [exp]	8.1	0.8326
AT1G02460			Pectin lyase-like superfamily ...		Lus10038059 [exp]	8.4	0.8994
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021048 [exp]	14.1	0.8160
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10016144 [exp]	17.8	0.8414
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021049 [exp]	19.4	0.8296
AT3G08030			Protein of unknown function, D...		Lus10029503 [exp]	21.7	0.8386
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10035932 [exp]	22.9	0.8497
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10038312 [exp]	23.5	0.8103
AT3G05950			RmlC-like cupins superfamily p...		Lus10035278 [exp]	24.1	0.7656
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10008706 [exp]	24.4	0.7785

Compare expression of checked genes

Lus10005572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.