Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17130 375 / 1e-130 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) AT2G32050 236 / 8e-77 Family of unknown function (DUF572) (.1) AT3G43250 218 / 6e-70 Family of unknown function (DUF572) (.1) AT2G29430 104 / 6e-28 Family of unknown function (DUF572) (.1) AT1G25682 83 / 7e-18 Family of unknown function (DUF572) (.1) AT1G25988 40 / 0.0008 Family of unknown function (DUF572) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013707 [exp] 534 / 0 AT1G17130 391 / 8e-137 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Lus10013706 [exp] 315 / 3e-109 AT1G17130 293 / 5e-101 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Lus10034268 [exp] 83 / 9e-18 AT1G25682 479 / 2e-172 Family of unknown function (DUF572) (.1) Lus10040296 [exp] 82 / 3e-17 AT2G39630 476 / 3e-170 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10041495 [exp] 80 / 1e-16 AT1G25682 467 / 1e-166 Family of unknown function (DUF572) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G096100 [exp] 410 / 3e-144 AT1G17130 375 / 1e-130 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Potri.001G377800 [exp] 404 / 1e-141 AT1G17130 396 / 1e-138 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Potri.010G130300 [exp] 82 / 2e-17 AT1G25682 436 / 3e-155 Family of unknown function (DUF572) (.1) Potri.008G115700 [exp] 81 / 3e-17 AT1G25682 446 / 7e-159 Family of unknown function (DUF572) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04502 [flax] [poplar] DUF572 Family of unknown function (DUF572)
Representative CDS sequence Show only first row Show all	>Lus10005575 pacid=23139660 polypeptide=Lus10005575 locus=Lus10005575.g ID=Lus10005575.BGIv1.0 annot-version=v1.0 ATGGGAGAGCGGAAGGTTCTGAACAAGTACTACCCACCGGACTTCGATCCGGCGAAGTTGCCACGCGCCCGCAGACCAAAGAATCAGCAGATTAAGGTCC GGATGATGCTTCCTATGAGCATCAGATGCAACACTTGCGGTAATTACATCTACAAGGGGACCAAGTTCAATTCTCGCAAAGAAGATGTCATCGGCGAGAC GTATTTGGGTATACAAATATTTCGATTCTACTTTAAGTGTACGAGATGCTCGGCCGAGCTTGCGATGAAGACTGATCCTCAGAATTCCGATTACATCGTG GAGAGCGGGGCGACGAGGAATTATGAGCCGTGGCGTAAAGAGGATGAGGAACTGGACGGTTTGAAGCAGAAAAGAGATGCTGAGGAGATGGGTGATGCTA TGAAGGCTTTAGAGAACAGGACGTTGGATTCCAAACGGGAGATGGATATCCTTGCTGCCCTTGATGAAGTGAAGTCCATGAAATCAAGGCAAGCAACTGT CAGCGTGGATGCGATGCTTGAGGTGTTGCAGCGCGGTGCTGCTGTGCAGGAGCAGAGGTTGGAGGAGGAGGATGAAGCCCTCATAAAGGCAATATTCGAA AAACCAAGAGAAATTATACGAAGGATTTCAGATGATGATTTGGACGAGGATGATCTGGAAATGCTTGCTCATAGATCTAAGAGGGCAAAGCTTGACGATG AAAACTCAGGAAAGCCTACAGATTCGCTCTTAAATGATACAAGTGTGGCCGAGAGCTCCAGTATAAAAGATAGCTCTAGGGATACCGGGAAAAAGAAGAA CGACGCTAAACCAAGTGTAAAACCTCCGATGGTCACAATAGTGGTCAAGAAGAAGGCAGCCATATCTGCTGAGAACAAGCCAGTGCAGAAAACTGCAGAG ATTAAGACTAAAACGGACGAGACAGAGGAGACTAAAAAGGACGATCCAGGCATGGGACTTCAATCCTTACTTCAAAGCTACGGCAGTGATGGTGACAGCG AATGA
AA sequence Show only first row Show all	>Lus10005575 pacid=23139660 polypeptide=Lus10005575 locus=Lus10005575.g ID=Lus10005575.BGIv1.0 annot-version=v1.0 MGERKVLNKYYPPDFDPAKLPRARRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYIV ESGATRNYEPWRKEDEELDGLKQKRDAEEMGDAMKALENRTLDSKREMDILAALDEVKSMKSRQATVSVDAMLEVLQRGAAVQEQRLEEEDEALIKAIFE KPREIIRRISDDDLDEDDLEMLAHRSKRAKLDDENSGKPTDSLLNDTSVAESSSIKDSSRDTGKKKNDAKPSVKPPMVTIVVKKKAAISAENKPVQKTAE IKTKTDETEETKKDDPGMGLQSLLQSYGSDGDSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17130			Family of unknown function (DU...		Lus10005575 [exp]	0	1
AT2G32090			Lactoylglutathione lyase / gly...		Lus10010552 [exp]	1.0	0.9399
AT2G16860			GCIP-interacting family protei...		Lus10039220 [exp]	1.7	0.9183
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10000285 [exp]	3.2	0.9121
AT3G16380		PAB6	poly(A) binding protein 6 (.1)		Lus10038840 [exp]	4.0	0.9017
					Lus10021689 [exp]	7.1	0.9203
AT4G27130			Translation initiation factor ...		Lus10039660 [exp]	8.7	0.9172
AT1G17130			Family of unknown function (DU...		Lus10013707 [exp]	9.5	0.8683
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10022904 [exp]	12.0	0.8924
AT1G72175			RING/U-box protein with domain...		Lus10020349 [exp]	12.2	0.9100
AT4G29490			Metallopeptidase M24 family pr...		Lus10008578 [exp]	16.6	0.8900

Compare expression of checked genes

Lus10005575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.