Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78430 154 / 5e-44 RIP2 ROP interactive partner 2 (.1) AT1G17140 151 / 1e-42 RIP1, ICR1 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013708 [exp] 467 / 4e-166 AT1G17140 229 / 8e-73 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G377900 [exp] 172 / 3e-50 AT1G78430 238 / 5e-76 ROP interactive partner 2 (.1) Potri.016G085900 [exp] 41 / 0.001 AT2G37080 474 / 2e-161 ROP interactive partner 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005576 pacid=23139637 polypeptide=Lus10005576 locus=Lus10005576.g ID=Lus10005576.BGIv1.0 annot-version=v1.0 ATGCAATTCTGGTTTATATTGGGATCCAGGAGTTCTGAATTGCCTCAGAGGCAATCGACACGAGGTCCACATCCACAAAGGACATCATCCGGCTCTTCAA CCGAGCGTAGTAGCCCCAAGGTGGTTTCATCATCAGATCGCCGCTCACCTCGAGCTGGTGGGCCACATTCTGATCCACCATTGCAGCAAAAGAAGCAGCT TGGCACAAGGATTGCTGATCTTGAGTCACAACTTGGCCAAGCACAGCAGGAGCTCAAGAGTCTCAAGGACCAGTTGGCATCCGCGGAGGCTGCTAAGAAG GAAGCTCAGAAAGAACTCGAGTGCAAGAAAGGCGCCCCAAATCCAGAACCTGAGGAAGCCGAAACACAGCAAAAACCTTCACAGGATGTTGTTGCAGACG ACAACGATCAGGAGACCGATGTGTTCGAAGTTCCGGTAGATAAAAAGGCGGTAGTGGAGCTACCAGAGAAGTTGGAGGAAGCAGTAGTAAAGCCTACTTC TGAAGAGGTAGCTTTGAAGGATGAGGAGATAGCTGCGCTTAAAGCGAAACTAGAAGAGACCGGAAAGGAGTTGGAGGATTCGAATAAGGAGAAGGAAGAG TTGAAGAGCCAGGTGAATGTTGCAGCTTCAAGGATGTCAAGTGCAAAGGCAAAGGAAGAGGCTTTGTGTGAAAGATTGAAGCTTTTGGGGCAAGAACTGG AGGGTAGTAAAGGGAATCAGACTGGGTTAAAGTTCGAGCTGGAGAGAGTGAAAGAAGAGAAAGAAGGGTTGGAAGCTGAGATGAAGATGATGAGAGTTCA GACTGAACAGTGGAGGAAAGCAGCAGATGCAGCAGCAGCTGTGCTAGCTGGCGGGAATGGAAGGATGATCGTATCCGAGAGGTGTGCTTCGATGGACAAT CACCACGTGTTCGAGACGCCAGGTGGTGGGTTTGGGAACAACGGGTTCGTCGGATCGCCTGGATTTGGCGATGATATGGATGGCGGGTTTGGGAGTGGGA AGCAGCAGCGTAGGGGGTCTGGGATTAAGATGTTTGGTGACTTGTGGAAGAAGAAACCTCAGAAGTGA
AA sequence Show only first row Show all	>Lus10005576 pacid=23139637 polypeptide=Lus10005576 locus=Lus10005576.g ID=Lus10005576.BGIv1.0 annot-version=v1.0 MQFWFILGSRSSELPQRQSTRGPHPQRTSSGSSTERSSPKVVSSSDRRSPRAGGPHSDPPLQQKKQLGTRIADLESQLGQAQQELKSLKDQLASAEAAKK EAQKELECKKGAPNPEPEEAETQQKPSQDVVADDNDQETDVFEVPVDKKAVVELPEKLEEAVVKPTSEEVALKDEEIAALKAKLEETGKELEDSNKEKEE LKSQVNVAASRMSSAKAKEEALCERLKLLGQELEGSKGNQTGLKFELERVKEEKEGLEAEMKMMRVQTEQWRKAADAAAAVLAGGNGRMIVSERCASMDN HHVFETPGGGFGNNGFVGSPGFGDDMDGGFGSGKQQRRGSGIKMFGDLWKKKPQK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17140		RIP1, ICR1	ROP INTERACTIVE PARTNER 1, int...		Lus10005576 [exp]	0	1
AT1G17140		RIP1, ICR1	ROP INTERACTIVE PARTNER 1, int...		Lus10013708 [exp]	2.6	0.9262
AT5G45650			subtilase family protein (.1)		Lus10007083 [exp]	6.2	0.8912
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Lus10009652 [exp]	6.9	0.8898
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10035176 [exp]	10.0	0.8721
AT5G62360			Plant invertase/pectin methyle...		Lus10031711 [exp]	11.8	0.8501
AT3G53730			Histone superfamily protein (....		Lus10005896 [exp]	13.2	0.8679
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10024371 [exp]	14.0	0.8703
					Lus10018463 [exp]	15.0	0.8656
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10043441 [exp]	15.5	0.8449
AT3G53730			Histone superfamily protein (....		Lus10004949 [exp]	19.6	0.8566

Compare expression of checked genes

Lus10005576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.