Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78420 347 / 6e-117 RING/U-box superfamily protein (.1.2) AT1G17145 339 / 1e-114 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013709 [exp] 588 / 0 AT1G78420 381 / 1e-131 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G378000 [exp] 493 / 8e-174 AT1G78420 387 / 1e-132 RING/U-box superfamily protein (.1.2) Potri.011G096000 [exp] 472 / 1e-165 AT1G78420 376 / 3e-128 RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005577 pacid=23139630 polypeptide=Lus10005577 locus=Lus10005577.g ID=Lus10005577.BGIv1.0 annot-version=v1.0 ATGGGTAATAAGTTGGGAAGGAGGAAGCAAGTGGTGGATGAGAGGTATACAAAGCCACAAGGATTGTATCTCCACAAAGATGTAGACCACAAGAAGCTAA GAAAACTCATACTTGAGTCCAAGCTGGCACCGTGCTATCCCGGGGACGAGGAGCTTTGCAATGATCACGAAGAATGTCCTATTTGTTTCCTGTATTATCC AAGCCTGAACAGGTCAAGATGCTGCATGAAGGGTATCTGTACAGAGTGTTTTCTGCAGATGAAAAATCCTAATTCAACCCGTCCTACTCAATGTCCTTTC TGCAAAACATCAAATTATGCTGTGGAGTACCGTGGTGTAAGAACGAAAGAGGAAAAGGGCTTGGAGCAAATTGAAGAACAACGTGTAATAGAAGCAAAAT TAAGAATGCGGAAACAAGAACTTCAGGATGATGAAGACAGGATGCAGAAAAGACTAGAATCAAGTTCTTCCAGCTCTAACGTTGCACTTGAAGAAGTTGC ATCTGAGGAGGTTGATTGTGGATCCTCAGCAGATTCATCCTATGCAGTGGCTGTCGGAACTGAAGAAATTGTTTCTTCTCGACCTTCTATCAGAGATCCT GTATTGTCAAGAGCGAGCAGGGATGGTGAATTCGACCTGGATCTCGAAGATATTATGGTCATGGAGGCAATATGGCTTTCTATTCAGGAAAATGGAAGAC CTAGGAATGTGCCGTATGATGTTTCATCCGAGCAATATGTCCCAGAATGCTATTCGTCAACCCCAGCAGTTCCACCAGTTGTTGCCTTGTCATCTTCCCC TTCCGGGGGTCTTGCTTGTGCTATTGCTGCCCTTGCCGAACGCCAGCAGATGGGTGGAGAACCATCTTCTTCCATTACAAATGGGAATATCTCTGCTGCG AACTTACTTCCCGGCTGTAACAGCTTTTACAACACTGTGAACCAGCAAGCGAGTAGTTACACTCCAGCAGAGAGCTCCAGCAACGTTTCACCCGACTGCG AAATCGTAGCCACAAAAGATAATGCGGAGTGGACTTCTAGCCGTGGATCTGATGCTGCTGAAGCAGGTACAAGTTACTCGAGCTCTGTTACAACAGAAGA GAGTGACATTTCCACAGTATTACTGCCACCACCACCTCCACCTTCCTTGCCTGATGAGATAGGAGGGAATTTCCAGAACGTCTCTGGCTCTATCGTCCCT GAAAGCTTCGAGGAACAGATGATGATGGCTATGGCCGTTTCGCTTGCTGAGGCTCGAGCTGTAACGACTGCACAAGGCAGCACATGGCAATAA
AA sequence Show only first row Show all	>Lus10005577 pacid=23139630 polypeptide=Lus10005577 locus=Lus10005577.g ID=Lus10005577.BGIv1.0 annot-version=v1.0 MGNKLGRRKQVVDERYTKPQGLYLHKDVDHKKLRKLILESKLAPCYPGDEELCNDHEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNSTRPTQCPF CKTSNYAVEYRGVRTKEEKGLEQIEEQRVIEAKLRMRKQELQDDEDRMQKRLESSSSSSNVALEEVASEEVDCGSSADSSYAVAVGTEEIVSSRPSIRDP VLSRASRDGEFDLDLEDIMVMEAIWLSIQENGRPRNVPYDVSSEQYVPECYSSTPAVPPVVALSSSPSGGLACAIAALAERQQMGGEPSSSITNGNISAA NLLPGCNSFYNTVNQQASSYTPAESSSNVSPDCEIVATKDNAEWTSSRGSDAAEAGTSYSSSVTTEESDISTVLLPPPPPPSLPDEIGGNFQNVSGSIVP ESFEEQMMMAMAVSLAEARAVTTAQGSTWQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78420			RING/U-box superfamily protein...		Lus10005577 [exp]	0	1
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043013 [exp]	1.0	0.9423
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Lus10030935 [exp]	1.4	0.9073
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10000663 [exp]	4.2	0.8890
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10039831 [exp]	10.1	0.8705
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	12.5	0.9066
AT3G63500			Protein of unknown function (D...		Lus10016399 [exp]	13.3	0.8666
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10041705 [exp]	16.2	0.8773
AT4G08350		GTA2, GTA02	global transcription factor gr...		Lus10028630 [exp]	16.8	0.8656
AT1G73980			Phosphoribulokinase / Uridine ...		Lus10009678 [exp]	17.7	0.8977
AT5G45190			Cyclin family protein (.1.2)		Lus10021927 [exp]	20.3	0.8817

Compare expression of checked genes

Lus10005577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.