Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53590 798 / 0 NTMCTYPE6.1 ,NTMC2T6.1 ,NTMC2TYPE6.1 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G14590 775 / 0 NTMCTYPE6.2 ,NTMC2T6.2 ,NTMC2TYPE6.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G05500 87 / 1e-17 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 87 / 2e-17 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G20080 84 / 8e-17 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G20990 81 / 1e-15 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT5G04220 76 / 3e-14 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G61050 74 / 1e-13 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G18370 74 / 3e-13 NTMCTYPE3, ATSYTF ,NTMC2T3 ,NTMC2TYPE3 C2 domain-containing protein (.1) AT1G03370 73 / 6e-13 C2 calcium/lipid-binding and GRAM domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013710 [exp] 1287 / 0 AT1G53590 817 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10026192 [exp] 932 / 0 AT1G53590 771 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10042475 [exp] 902 / 0 AT3G14590 741 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10013563 [exp] 88 / 1e-17 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10017268 [exp] 87 / 1e-17 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008055 [exp] 86 / 2e-17 AT1G05500 775 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10005069 [exp] 86 / 2e-17 AT2G20990 766 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10038117 [exp] 85 / 6e-17 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041034 [exp] 80 / 3e-15 AT5G11100 710 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G379800 [exp] 817 / 0 AT1G53590 833 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.005G241700 [exp] 101 / 3e-22 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G019800 [exp] 94 / 5e-20 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 92 / 4e-19 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G174600 [exp] 86 / 2e-17 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.009G134200 [exp] 86 / 3e-17 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.006G063900 [exp] 85 / 7e-17 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 84 / 9e-17 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.015G046700 [exp] 74 / 2e-13 AT3G18370 968 / 0.0 C2 domain-containing protein (.1) Potri.008G038300 [exp] 73 / 4e-13 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10005578 pacid=23139669 polypeptide=Lus10005578 locus=Lus10005578.g ID=Lus10005578.BGIv1.0 annot-version=v1.0 ATGTCGATTATGTTCCATGTGGCCTTCGTCTTGTTTCTGCTATGGTTGCTCTCTTGCTTCGCCCAGATTCACCCTTCTGCTTACTTCTTCTCTTTGATTT ATCTCTATCTGGTTCACGAGAGGTATATAACGAAGTTGAAGAAGAGACTGCAGTACGAAGAATCCAAACAAGCTAATCAGAAAAGGGTGCTCTGTGATTC TGAAACAGTGAGGTGGCTAAACCATGCTGTGGAGAAGATATGGCCCATATGTATGGAAGAAATCACATCACAGAAGATTCTTCGCCCCATCATACCTTGG TTCTTGGACAAGTACAAACCATGGACTGCTAAAAAGGCCGTTGTTCAGCATTTGTATATGGGCAGAAACCCGCCGTTGTTCACAGAAATGAGAGTTCTTC GCCAATGTACTGGCGACGACCACTTGGCATTGGAGATGGGATTAAAACTCAGTACGGCTGATGATATGAGTGCAATTCTTGCTGTAAAATTGAGGAGGAG GCTGGGATTTGGGATGTGGACGAAATTGCATATAACCGGCATGCAAGTGGAAGGAAAGGTCTTGATCGGAATAAAGTTCCTACGCCGCTGGCCTTTCATT GGACGTCTACGAGTATGCTTTGCGGAGCCACCTTATTTCCAAATGACTGTGAAACCCATCTTCACCCACGGGGTTGATGTAACTGTGGTTCCAGGAATCG CAGGGTGGCTAGACAAACTTCTGTCTATGGCGTTTGAGGAGACTCTGGTTCAGCCCAATATGCTAGTTGTTGACATGGAGAAATTTGTTTCACCTAGTGA AGAAAGTTGGTTCTCTGTGGATGAGAAAAAGCCGATTGCTTTTGCGAAAGTTGAGGTTATAGAAGCATCTGAGATGAAACCATCAGATTTAAATGGTCTG GCTGATCCATATGTGAAAGGACAACTTGGCCCCTATGGGTTCAGGACGAAGACACAAAAGAAAACCTTGACTCCTAAATGGCTTGAGGAGTTTGAAATCC CTATTGTTACATGGGAATCACCAAATGTGCTAGTCGTTGAAGTTCGTGACAAAGACCACTTCGTCGATGATTCTCTCGGGAACTGCACTGTGAATATTAA CGACTTGAGAGATGGCGAGAGGCGCGACATGTGGTTGCCGCTTCAGAACGTCAAGATCGGGAGGCTGCATCTCGCTATAACCGTCCATGAGGAGAAGGAG GACGTTGCCTGTTCTATAGAAGGAGAAGAAGGATTGAACAATCAAGAAGTACAACAACAGCCTTTCGCGAATGACACTCCGAACAGGTCTTCCTTTTCAT CCGCAACATCGGAAGTATCTCAAAAGGTAGCGGACGGTTTCGAGCCAATCAATGTCGCAGGAGAGCAAGAGACCGGGATGTGGATCCATCACCCTGGGAA CGAAGTACCGCCGACTTGGGAGCCAAGAAAGGGGAAAACCAGGCAAGTAGGGAAAGCTGTTGGTAATGATTCATTTGGCAGCAGTGTTTCGCCCGGGGTA GACAGCAGTAGCTCCGACGAAGCCACCGAGGGTAAAAAATCTGGAAATAGGGTTCGTCGTGGTCTGCGTAAGATCACTTCAGCATTCCATAGAAGTCCGA AAGATGTTGGTATTCCGGAAAATGTCGAGGAAAGTGTTCAGTCTCCTTATGGCAATATTAGAGCAGCGAATCAGAGAGAAGGCGGAGTGAAGTTCATCGT CGAAGATAGCCTCTCCGGTCCGATACACGGTAAAGATTCTTCAAAGGCGTTGGATTCGAGTCCGGAGTCTACACATTCAGCCGAAAGTCCTGGAAAGGGG GATCATAAGAAACACATGCCGCATCGTTTCTTGAACCATGTGGACAAGTCGGCTCGCAACTTGAAACACGTCCTGTCTAGGAAAGGTTCGAGACTGTCTC GTGGCGTTCGACAGGGAGGACCGGACCTGGAAATGGATCCGGAGTACGACTCTTCTGATGATGATGATGAATCTGTCCCTGCTGTTCCGCCACAAGAGCA GCCAGTTGTTGCCGATCCCATCATACCCGGTGATGGTATCAACGACGATTCGAAAAACATGGAGCAGAACAGCAGTGAAGAGCAGAGTTATAATGATGAA GGCGCAGAAAAGATCAACAGCAAGGAATCTTCCCTGAAAGCTACTGAAGAATCGTCTGAAGGTAAGGTGGAAGAGGAAAGAAAGTGA
AA sequence Show only first row Show all	>Lus10005578 pacid=23139669 polypeptide=Lus10005578 locus=Lus10005578.g ID=Lus10005578.BGIv1.0 annot-version=v1.0 MSIMFHVAFVLFLLWLLSCFAQIHPSAYFFSLIYLYLVHERYITKLKKRLQYEESKQANQKRVLCDSETVRWLNHAVEKIWPICMEEITSQKILRPIIPW FLDKYKPWTAKKAVVQHLYMGRNPPLFTEMRVLRQCTGDDHLALEMGLKLSTADDMSAILAVKLRRRLGFGMWTKLHITGMQVEGKVLIGIKFLRRWPFI GRLRVCFAEPPYFQMTVKPIFTHGVDVTVVPGIAGWLDKLLSMAFEETLVQPNMLVVDMEKFVSPSEESWFSVDEKKPIAFAKVEVIEASEMKPSDLNGL ADPYVKGQLGPYGFRTKTQKKTLTPKWLEEFEIPIVTWESPNVLVVEVRDKDHFVDDSLGNCTVNINDLRDGERRDMWLPLQNVKIGRLHLAITVHEEKE DVACSIEGEEGLNNQEVQQQPFANDTPNRSSFSSATSEVSQKVADGFEPINVAGEQETGMWIHHPGNEVPPTWEPRKGKTRQVGKAVGNDSFGSSVSPGV DSSSSDEATEGKKSGNRVRRGLRKITSAFHRSPKDVGIPENVEESVQSPYGNIRAANQREGGVKFIVEDSLSGPIHGKDSSKALDSSPESTHSAESPGKG DHKKHMPHRFLNHVDKSARNLKHVLSRKGSRLSRGVRQGGPDLEMDPEYDSSDDDDESVPAVPPQEQPVVADPIIPGDGINDDSKNMEQNSSEEQSYNDE GAEKINSKESSLKATEESSEGKVEEERK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10005578 [exp]	0	1
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10030221 [exp]	8.1	0.7810
AT1G12855			F-box family protein (.1)		Lus10042738 [exp]	10.4	0.7834
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10030734 [exp]	15.5	0.7542
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10004005 [exp]	17.0	0.7455
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009674 [exp]	19.2	0.7627
AT5G67290			FAD-dependent oxidoreductase f...		Lus10030334 [exp]	24.0	0.7682
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10030312 [exp]	24.2	0.7786
AT1G29800			RING/FYVE/PHD-type zinc finger...		Lus10029271 [exp]	29.6	0.7734
AT5G03990			unknown protein		Lus10016362 [exp]	31.0	0.7721
AT4G37420			Domain of unknown function (DU...		Lus10016022 [exp]	31.8	0.7390

Compare expression of checked genes

Lus10005578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.