Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17220 898 / 0 FUG1 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) AT4G11160 326 / 2e-98 Translation initiation factor 2, small GTP-binding protein (.1) AT1G21160 104 / 2e-22 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76810 100 / 2e-21 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76820 99 / 8e-21 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76720 94 / 2e-19 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT2G27700 84 / 2e-16 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (.1.2) AT5G13650 56 / 1e-07 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT5G08650 54 / 5e-07 Small GTP-binding protein (.1) AT5G39900 49 / 3e-05 Small GTP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013713 [exp] 1150 / 0 AT1G17220 1267 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Lus10033933 [exp] 201 / 8e-54 AT4G11160 927 / 0.0 Translation initiation factor 2, small GTP-binding protein (.1) Lus10012856 [exp] 97 / 7e-20 AT1G76820 1211 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10030500 [exp] 96 / 9e-20 AT1G76810 1217 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10023474 [exp] 70 / 6e-14 AT1G76810 224 / 5e-69 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10035968 [exp] 63 / 1e-09 AT5G08650 1102 / 0.0 Small GTP-binding protein (.1) Lus10007535 [exp] 57 / 8e-08 AT5G13650 1121 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10012200 [exp] 57 / 1e-07 AT5G13650 1019 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10025694 [exp] 52 / 2e-06 AT5G08650 1009 / 0.0 Small GTP-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G140100 [exp] 962 / 0 AT1G17220 1160 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Potri.001G436300 [exp] 946 / 0 AT1G17220 1076 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Potri.001G095500 [exp] 318 / 8e-96 AT4G11160 828 / 0.0 Translation initiation factor 2, small GTP-binding protein (.1) Potri.019G103600 [exp] 103 / 3e-22 AT1G76810 976 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.012G039200 [exp] 97 / 3e-20 AT1G76810 1096 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.006G053000 [exp] 60 / 9e-09 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.001G305300 [exp] 59 / 2e-08 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.002G215900 [exp] 52 / 2e-06 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.014G138100 [exp] 51 / 3e-06 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.003G113500 [exp] 51 / 4e-06 AT1G62750 1310 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [flax] [poplar] PF11987 [flax] [poplar] IF-2 Translation-initiation factor 2 CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain CL0123 [flax] [poplar] HTH PF04760 [flax] [poplar] IF2_N Translation initiation factor IF-2, N-terminal region
Representative CDS sequence Show only first row Show all	>Lus10005581 pacid=23139652 polypeptide=Lus10005581 locus=Lus10005581.g ID=Lus10005581.BGIv1.0 annot-version=v1.0 ATGGTGGTATTAGTTGGCAGCATGCCGTCTCTAGCTTCATTGGTGAGTTTCGGAAGCTTGAGCATGGCGTTAGGGACTTCCACGGCCGCTCCCGAATGTT CGTCCTACTCGGTGGTAAGAAGAATTTCTGTGTCCAAACGTGCGCTTAGGCGTGCCAGGAAGTGGCATTCTATATCAACTTCTTCAATCTCTAGGGATTC AGTTGCCACCACTGGTTTAGTTGCGGACCAAGGCAATGCAATGTCTTCTGATTTGAGCAGTAGTAGTGCAATTAGAAGCAGTAGCGATGGGAATGATGGA GATGGTACTGACATTGTACTCAGGGCTGCTCCAAAGCCTCTCCTCAGGCCACCATCCATAGGTTTGAACAATCAATCTTCTTCGAGGACGAATCATGCAG GGCGTTTAGGTGGTGGAAAGGATGACAAGAGTAGAATCAACATGTCCCTTGATGAGGTATTGGAGAAGGCTGAGAAGCTCGAGACTCCGAAACCCAAACC TGCTAGTCCGCAGCTAGGTAGTCGAAATGGTAGCAGCATTGGTAGTAGTAGTAGTAGTGGCACGAATGGTGGGAGTGTAAATAATACTGCAACATCCAAT CAGCCGACGAATCCTGCTGCTACAAGGAAAGCTAAAACCTTGAAGAGTGTATGGAGAAAAGGCGATACGGTGGCGAATGTGCAAAGGGAGGTAAAGCAGT TTCCGAAACCGGTTAATAATAAGGTTGTGAAAGAAGAAGAACCTAATGCTACTGCTTCAGTGGGGAAACAAGAAGCCCGGCTTAGTGTTACACCACCAAC ATTGGCACGACCTCCTCCGGGAAAGGGCCCTGCTGTTGGGAGATTCAAAGAACAGCAGAAGAAGAAATATGCTTCTCCTGGGGTACCAAGGAGTCGGCTC ATGAATAATGAGGCCGATGACGAGACATCAGATGTGAATCGCTCTAGTTCTGGTGCAAGGAAAGGGAGGAAATGGAGCAAAGCAAGTCGCAGGGCAGCCA GACAACAGGCGGCCAGGGATGCAGCTCCTGTGAAAGTGGAAATTTTAGAGGTAGGGGAGAAAGGAATGGAAGTGGAGGAATTAGCCTTCAACTTGGCCAT CGACGAAAGTGAGGTTCTGGGTTATCTGTACTCGAAGGGAATAAAACCTGATGGGGTGCAAGTGCTGGACAAGGACATGGTGAAGATGATATGTCAAGAA TATGAGGTGGAAGTCATTGATGCTGATCCATTTAAATATGAAGAAATGGCAAGAAAGAAGGAAGTTCTCGATGAAGACGATTTGGACAAGCTGGTAGAAA GGCCTCCTGTCCTTACAATAATGGGCCACGTAGATCATGGCAAGACAACTCTGCTGGACTACATCCGTAAAAGTAAGGTAGCTGCATCAGAGGCTGGTGG GATTACTCAAGGAATCGGAGCATATGAAGTTCTAGTGCCCGTAGATAACAAATTGCAGCCATGTGTCTTTCTAGATACTCCGGGACATGAGGCATTTGGA GCAATGAGAGCACGTGGAGCACGAGTGACAGATATTGCTGTCATTGTAGTGGCAGCCGATGATGGTATTCGTCCTCAGACAAACGAGGCCATAGCTCATG CCAAGGCTGCTGGTGTACCTATTGTGATTGCTATAAATAAGATAGACAAAGAAGGAGCTAATCCAGACAGAGTGATGCAAGAGCTGTCATCAATAGGTCT CATGCCTGAGATTTGGGGTGGTGACATTCCAATGGTTCAGATCAGTGCCCTAAACGGGGAGAATATTGATGAACTATTGGAAACAGTCATGCTTGTTGCC GAGTTACAAGAATTGAAGGCAAACCCTGATCGGAAGGCTAAGGGTACCGTAATTGAAGCTGGTCTTGACAAAGCTAAAGGACCAACAGCAACGTTTATTA TACAGAACGGAACCCTCAAAAGGGGAGATGTTGTTGTTTGTGGAGAAGCTTTTGGAAAGGCGCGTGCTTTATTTAACAATATTGGGAATCAAGTTGATGA AGCTGGACCCTCAATACCTGTTCAGGTCATTGGATTAAATCATGTACCTCAAGCAGGTGATGAATTCGAAGTCGTTGACTCACTTGATGTTGCCCGTGAA AGGGCAGAAGCACGTGCTGAATCTTTGCGAAATGAGCGCATGTCAGCCAAAGCCGGGGATGTGAAAGTGACACTTTCTTCCTTAGCCTCGGCTGTTTCTT CTGGAAAGCTAGCTGGGTTAGACTTGCATCAGTTGAACATTATACTTAAAGTTGATCTTCAGGGGTCTATTGAGGCTGTAAGGCAGGCATTGCAGGCACT CCCACAAGACAATGTCTCTCTGAAGTTCCTCTTGCAAGCAACAGGGGATGTAAGCACAAGCGATGTTGATCTTGCTTCTGCTACTGAGTCTATTATTTTT GGATTTAATGTCAAAGCGCCAGGCTCCGTTAAGAAGTACTCAGAGAACAAAGGTGTTGAAATTCGGCTATACAAAGTTATCTATGACCTCATAGATGATG TTCGCAAAGCAATGGAAGGACTCTTGGACTCTGTTGAGGAAGAAGAACCGATTGGGTCAGCAGATGTCCGTGCTGTATTCAGCAGTGGCAGTGGTCGTGT TGCAGGATGCATGGTGACTGAGGGCAAGGTAGAGAAAGGTTGCGGCATTAAGGTGATACGAAGACGGAAGACTGTCCATGTTGGTGTTCTTGATTCTCTG AGAAGAGTTAAAGAAGCTGTCAAGGAGGTTGGCGCCGGTCTGGAGTGTGGTATCGGGGTGGAGGATTTCGACGATTTCCAGGAAGGAGACGTGCTAGAGG CATTCAACAAGGTTGAGAAACGACGATCCCTAGAAGAGGCGTCGGCTTCAATGGCAGAAGCAGTGCAACAAGTAGGAATTGACTTGTAG
AA sequence Show only first row Show all	>Lus10005581 pacid=23139652 polypeptide=Lus10005581 locus=Lus10005581.g ID=Lus10005581.BGIv1.0 annot-version=v1.0 MVVLVGSMPSLASLVSFGSLSMALGTSTAAPECSSYSVVRRISVSKRALRRARKWHSISTSSISRDSVATTGLVADQGNAMSSDLSSSSAIRSSSDGNDG DGTDIVLRAAPKPLLRPPSIGLNNQSSSRTNHAGRLGGGKDDKSRINMSLDEVLEKAEKLETPKPKPASPQLGSRNGSSIGSSSSSGTNGGSVNNTATSN QPTNPAATRKAKTLKSVWRKGDTVANVQREVKQFPKPVNNKVVKEEEPNATASVGKQEARLSVTPPTLARPPPGKGPAVGRFKEQQKKKYASPGVPRSRL MNNEADDETSDVNRSSSGARKGRKWSKASRRAARQQAARDAAPVKVEILEVGEKGMEVEELAFNLAIDESEVLGYLYSKGIKPDGVQVLDKDMVKMICQE YEVEVIDADPFKYEEMARKKEVLDEDDLDKLVERPPVLTIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYEVLVPVDNKLQPCVFLDTPGHEAFG AMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKEGANPDRVMQELSSIGLMPEIWGGDIPMVQISALNGENIDELLETVMLVA ELQELKANPDRKAKGTVIEAGLDKAKGPTATFIIQNGTLKRGDVVVCGEAFGKARALFNNIGNQVDEAGPSIPVQVIGLNHVPQAGDEFEVVDSLDVARE RAEARAESLRNERMSAKAGDVKVTLSSLASAVSSGKLAGLDLHQLNIILKVDLQGSIEAVRQALQALPQDNVSLKFLLQATGDVSTSDVDLASATESIIF GFNVKAPGSVKKYSENKGVEIRLYKVIYDLIDDVRKAMEGLLDSVEEEEPIGSADVRAVFSSGSGRVAGCMVTEGKVEKGCGIKVIRRRKTVHVGVLDSL RRVKEAVKEVGAGLECGIGVEDFDDFQEGDVLEAFNKVEKRRSLEEASASMAEAVQQVGIDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10005581 [exp]	0	1
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10013713 [exp]	1.0	0.9895
AT3G08010		ATAB2	RNA binding (.1)		Lus10029507 [exp]	1.4	0.9605
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Lus10023891 [exp]	2.0	0.9554
AT4G15110		CYP97B3	"cytochrome P450, family 97, s...		Lus10039040 [exp]	2.2	0.9553
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Lus10040841 [exp]	2.4	0.9458
AT2G34860		EDA3	embryo sac development arrest ...		Lus10024221 [exp]	2.4	0.9563
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030258 [exp]	3.5	0.9331
AT5G42070			unknown protein		Lus10032408 [exp]	3.7	0.9316
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Lus10018218 [exp]	4.6	0.9456
AT1G80770		PDE318	pigment defective 318, P-loop ...		Lus10019508 [exp]	5.7	0.9334

Compare expression of checked genes

Lus10005581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.