Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53700 310 / 6e-103 PK3AT, WAG1 PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1 (.1) AT3G14370 296 / 1e-97 WAG2 Protein kinase superfamily protein (.1) AT2G26700 199 / 2e-59 PID2 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT2G34650 189 / 1e-56 ABR, PID PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) AT5G40030 181 / 4e-53 Protein kinase superfamily protein (.1) AT2G44830 184 / 1e-52 Protein kinase superfamily protein (.1) AT1G16440 178 / 8e-52 RSH3 root hair specific 3 (.1) AT5G47750 174 / 1e-49 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT1G79250 173 / 1e-49 AGC1.7 AGC kinase 1.7 (.1.2) AT4G26610 172 / 1e-49 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013715 [exp] 379 / 4e-130 AT2G26700 472 / 2e-164 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10030051 [exp] 199 / 7e-60 AT2G26700 577 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10036150 [exp] 195 / 3e-59 AT2G34650 521 / 0.0 PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) Lus10033029 [exp] 197 / 7e-59 AT2G26700 572 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10016629 [exp] 185 / 1e-53 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10032185 [exp] 182 / 4e-53 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 182 / 5e-53 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10042911 [exp] 181 / 5e-53 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10020571 [exp] 185 / 7e-53 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G139800 [exp] 319 / 2e-106 AT1G53700 514 / 3e-180 PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1 (.1) Potri.001G435900 [exp] 303 / 3e-100 AT1G53700 475 / 4e-165 PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1 (.1) Potri.015G093400 [exp] 194 / 6e-58 AT2G26700 551 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.017G075400 [exp] 184 / 6e-54 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 184 / 2e-52 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.014G047500 [exp] 183 / 3e-52 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.006G003800 [exp] 178 / 4e-51 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.001G344600 [exp] 178 / 7e-51 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.010G175900 [exp] 175 / 4e-50 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.016G004900 [exp] 175 / 6e-50 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10005583 pacid=23139627 polypeptide=Lus10005583 locus=Lus10005583.g ID=Lus10005583.BGIv1.0 annot-version=v1.0 ATGGACGAAGCTCAAGATTACTACGATCACGATAGTTTCCCCGGCGACACGGATCTCGATTTCAGCTTCACATCTACCGTCACTGACCGGACTTTCGCTT CCTCCAGTGCTCGTTCCAGCCTTGCTCGGTCCAGCTTAAACCTCAGCTTCAACGAGCGCCTCTCTACGACTTCCTCCGGCACTGTCGGCGCCGCGCCTTC CTCCTGCTCCAACTCCTACGATTCGCTTCACCACCGGAGGTCGGATCCTCACTGGTCGGCGATCATGACGACAACGAACCTGTCGTCCGATGGGCGGCTC CACCTCCGTCATCTCAAGCTGCTCCGCCATCTCGGGGCGGGGAATTTGGGCCGGGTTTTCCTCTGTAAAATTAGGGATTGCAGCGACGGATCCCAATTCG CGCTCAAGGTTGTGGACAGAGACACTCTGAGCAAGAAGAAGCTATCTCACGTTCAGATGGAGGCGAAAATCCTCTCGCTGCTCGACCACCCTTTCCTCCC TACGCTCTATGCTCGAATCGACGTCTCTCACTACACCTGTCTCTTGATTGATTACTGCTCCAACGGCGATTTGCACTCTGTTCTCCGGAAGCAGCCAGGG AACTGCTTCCCTGTCGCCGCCGTCAAGTTCTTTGCTGCTGAGGTACTCGTCGCGCTCGAGTATCTCCACGCGATGGGGATCGTATACCGAGATCTGAAGC CTGAGAACATTCTGCTCCGCGAAGACGGCCACGTCATGCTCTCCGATTTCGATCTGTGCTTCGAGGCGGATGTGGTCCCCACCTTTCAGGTGGGGCCCAC CCCTGCCGGCGGCACACCAGTCCGGCAGCAGCGGAGGAGGACGACGCGGAGGAGTGGGAGGAGAGAAGTTCAGGAGAAAGAGATGGCGGCGGAGTTCGTC GCTGAGCCGACGGCAGCATTGTGGCGTTTCCTCCGGCGGAGGGGATGGAGGCGGTGCAGGATCTAA
AA sequence Show only first row Show all	>Lus10005583 pacid=23139627 polypeptide=Lus10005583 locus=Lus10005583.g ID=Lus10005583.BGIv1.0 annot-version=v1.0 MDEAQDYYDHDSFPGDTDLDFSFTSTVTDRTFASSSARSSLARSSLNLSFNERLSTTSSGTVGAAPSSCSNSYDSLHHRRSDPHWSAIMTTTNLSSDGRL HLRHLKLLRHLGAGNLGRVFLCKIRDCSDGSQFALKVVDRDTLSKKKLSHVQMEAKILSLLDHPFLPTLYARIDVSHYTCLLIDYCSNGDLHSVLRKQPG NCFPVAAVKFFAAEVLVALEYLHAMGIVYRDLKPENILLREDGHVMLSDFDLCFEADVVPTFQVGPTPAGGTPVRQQRRRTTRRSGRREVQEKEMAAEFV AEPTAALWRFLRRRGWRRCRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Lus10005583 [exp]	0	1
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10014731 [exp]	1.7	0.8997
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10034227 [exp]	5.2	0.8605
AT5G23730		EFO2, RUP2	REPRESSOR OF UV-B PHOTOMORPHOG...		Lus10027454 [exp]	5.9	0.8339
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10024388 [exp]	6.6	0.8891
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10029778 [exp]	7.3	0.8225
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10034522 [exp]	8.7	0.8360
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10008612 [exp]	9.2	0.8163
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10002374 [exp]	9.9	0.8085
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10005248 [exp]	10.2	0.8272
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Lus10040910 [exp]	12.1	0.7896

Compare expression of checked genes

Lus10005583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.