Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78540 605 / 0 STATLB, ATSHB STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2) AT1G17040 605 / 0 STATLA, ATSHA STAT-TYPE LINKER-SH2 DOMAIN FACTOR A, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN A, SH2 domain protein A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013716 [exp] 1333 / 0 AT1G78540 622 / 0.0 STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G380900 [exp] 806 / 0 AT1G78540 592 / 0.0 STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2) Potri.011G102100 [exp] 803 / 0 AT1G78540 591 / 0.0 STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2) Potri.008G139800 [exp] 48 / 4e-07 AT1G78540 51 / 4e-09 STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005584 pacid=23139667 polypeptide=Lus10005584 locus=Lus10005584.g ID=Lus10005584.BGIv1.0 annot-version=v1.0 ATGGGTGACGACACCATCAAAACCGAAGACTACACCTCGCTGAAGGAATTTAGGGTGGATATTGATGTGGCGAAGGGAGAAGAGGAAAACGATGCAGAGA GGAAATTTTCTGTGTGCTTCTGGATTTACCTCGTCAAAAGCTCCTCTGTTTCGTATCCGACTCCGATAATCAACCAGGTTGGCTCGGATGGTGACTTTGT TGCTCCTTTTCTTTTCCTGAATGAAAGGAGGATAATGATGTTACGTCTGCTGTGCCCCGTGCGGAAAGACAGTCCTCCACATACTGATTCTGCTTCATTG CTTGAGACACCTCATGCGTCAATGGCAACTGAGTTCCCATTGGAGAAGTGGGTTCATGTTGGATGCGAAGTTTCTGCCACTGTTCTGCATCTTCATATTA ACGGAGAAAATCTTGTGGAACTGTGTTTTCCATTGCCGTCCATGACCCAGTCTAACTCAGATGGTTTAAAGACGATAACTTTAGTTGGTCCTAGTATAGA TAATTGTTTGCAAGGTTACGTCCACGATGTGCAAGTCTCACACACAAGTTCATCTGTCAGGGACTGCTATTTTAAGGATCCACCTCTTCAATTATGTATT GATAAGTCATCTACCATTGAGATTGAAGAAGACAATGATGGCATCTGGAGTATTGTTGGCGGGAAGGCTTCTTGTCGCAGGATATTTTCTCTGGATGTTG TTCTGTTAAATGCAATTAACCAATCCATTAACAAGGAACTGGAGGTTATTTCTTCCCTTATATATGCTGATAATGGACTACCAGTGGAGAAGACATCTGA TGATGAAGCTCCTCTTCTGACAAGTTTTGATGGCATTGAATTTCCTTCTTGTGATAGGACAAGTAAACTATTGAATGGCCGCACGTCCTTCAAGCTCAAG ATTTCCCAGCTCTCCTCCAAGTGTGAAAATAGGCTATTTTACATCAAGTTTGAGCTTCTGAAATACAAAGGTTATCGTTTTCTCGAGGCATTTTGTCATC CTATTCGTTGTATATCCCGTAACCGGTATCCACGACCATTATCTGCCACATTGAGAAGACCAACATCTACTCAATATTCTTTGAGTGTGTGCCCATCAAT TGCATCAGACAATGGATCTCTGGAACTGCAGAACTCTCTTCATGAAGGAGACGTTACCCCATCATCAAAAAAATTTAAATTGGTTGATGAGCAAACATCT TCAGCACCTCAAACGGAGGAGGAACACCATTCTCAAGGTTTCGCAGCTAATCAGGCGGAGGCAATGGAACTCGTAGAAGAAGGGAACTCCCCATCTGAGT TAGATAGTACAGAAGAGAGAATTTCAGACTACAATATTGAATCGAAAACTCAATATTCAATTCCAGATCCTATGATTTTCAAATACTGCCTTGGTAGCTT GACTGATCGTGCGCTACTGATGAAAGAGGTTTCAACCTCAGCCTCCGATGAAGAGCTTTTCAGATTTGCAGATAAGGTCTCTCTGTACTCAGGATGTGCC CATCACAGGAATTCGATTGTTATTGGGAAGAAGTTAATAGAAGAAGGGACAAGACTATGGAATTCAATCACTCAACAGAACCACCCTGCTCGGTGGGAGA ATATAGCTTTTGAGATCGAGAAGCAATTCATGAAGATTGCTTCTTGCAGTACTAGATCTCTCGTCGAACAGGACTATGATCTTCTCAGGAGAATCGCTGG CTGCCGCGAGTATATGGCTCAAGAAAACTTTGAGAAGATGTGGTGTTGGCTTTACCCTGTGGCTTGTACACTATCAAGAGGCTGGGTGAACTCATTGTGG AAATGCTCATCCCCCAAGTGGATAGAAGGGTTTATCACCAAGGAAGAAGCAGAGTTGTCGCTTCGAGGCGCCAGGGGTCTTCAAGAGCCCGGCACCTTCA TACTGCGGTTTCCTACTTCAAGGTGCTGGCCCCATCCTGACTCCGGGGGCTTGGTGGTAACATATGTTGGAAGCGATTACTCAATACATCACCGGCTGCT TTCGTCTGAGTACATCAATAGCAATGAAAGGCAAAGAAGTGCGAAGCAAGTGCAGGAGATGATATTGGCAGAGCCAGAACTGTGTCGATTAGGAAGGCAA GCCTCGTGA
AA sequence Show only first row Show all	>Lus10005584 pacid=23139667 polypeptide=Lus10005584 locus=Lus10005584.g ID=Lus10005584.BGIv1.0 annot-version=v1.0 MGDDTIKTEDYTSLKEFRVDIDVAKGEEENDAERKFSVCFWIYLVKSSSVSYPTPIINQVGSDGDFVAPFLFLNERRIMMLRLLCPVRKDSPPHTDSASL LETPHASMATEFPLEKWVHVGCEVSATVLHLHINGENLVELCFPLPSMTQSNSDGLKTITLVGPSIDNCLQGYVHDVQVSHTSSSVRDCYFKDPPLQLCI DKSSTIEIEEDNDGIWSIVGGKASCRRIFSLDVVLLNAINQSINKELEVISSLIYADNGLPVEKTSDDEAPLLTSFDGIEFPSCDRTSKLLNGRTSFKLK ISQLSSKCENRLFYIKFELLKYKGYRFLEAFCHPIRCISRNRYPRPLSATLRRPTSTQYSLSVCPSIASDNGSLELQNSLHEGDVTPSSKKFKLVDEQTS SAPQTEEEHHSQGFAANQAEAMELVEEGNSPSELDSTEERISDYNIESKTQYSIPDPMIFKYCLGSLTDRALLMKEVSTSASDEELFRFADKVSLYSGCA HHRNSIVIGKKLIEEGTRLWNSITQQNHPARWENIAFEIEKQFMKIASCSTRSLVEQDYDLLRRIAGCREYMAQENFEKMWCWLYPVACTLSRGWVNSLW KCSSPKWIEGFITKEEAELSLRGARGLQEPGTFILRFPTSRCWPHPDSGGLVVTYVGSDYSIHHRLLSSEYINSNERQRSAKQVQEMILAEPELCRLGRQ AS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78540		STATLB, ATSHB	STAT-TYPE LINKER-SH2 DOMAIN FA...		Lus10005584 [exp]	0	1
AT1G09050			unknown protein		Lus10004495 [exp]	2.6	0.8154
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10011357 [exp]	12.2	0.7330
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10038007 [exp]	16.5	0.8090
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10006650 [exp]	19.4	0.7850
AT2G47330			P-loop containing nucleoside t...		Lus10011466 [exp]	19.6	0.8028
AT1G74860			unknown protein		Lus10033128 [exp]	22.2	0.7205
AT4G14920			Acyl-CoA N-acyltransferase wit...		Lus10006110 [exp]	25.0	0.8038
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Lus10043258 [exp]	29.0	0.7990
AT1G21080			DNAJ heat shock N-terminal dom...		Lus10030713 [exp]	36.5	0.7344
AT5G60760			P-loop containing nucleoside t...		Lus10016116 [exp]	37.2	0.7287

Compare expression of checked genes

Lus10005584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.