Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53645 197 / 2e-56 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013717 [exp] 273 / 6e-90 AT1G53645 224 / 1e-71 hydroxyproline-rich glycoprotein family protein (.1) Lus10013718 [exp] 186 / 3e-54 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G137000 [exp] 201 / 2e-58 AT1G53645 239 / 7e-73 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005585 pacid=23139668 polypeptide=Lus10005585 locus=Lus10005585.g ID=Lus10005585.BGIv1.0 annot-version=v1.0 ATGCATGCCAAAGTTGTCATGATGATCATGCTTCTTCTGAGTCTTCTCTTGGTTCCTTCAATCATTCAACCACCCCCGGCCGTTAGCCCATTCCCGCGCT CTCCCTTCGCAAGCGGCCATGAAGTATTGCTCACGTTGCTGTACCCAGTAGTCGTCCACAGGTTTAAATTCTTGAGAGATGTGAAGGAGACGCTGTTAGA AGAGTCTGATCGCATCAACGGCGGCGATGGTGTCGAAAACAACCATGTGCATTCACGGACGAGGCTTTACGATCCCAACCAATTTCATCGGAAGCCATGC TTCCAGGAACTCTCCGTCCTTATTCTCTCCCTTCTCCACTTCCGCCGGTGGTCGAGGCCGCGGCAGCGGGGGGGGCGGCGGTGGACGTGGTCTCAGATCT TCACTCCCGGCCAGTTCTCCTTCGCTGCCGACACACCCGCTGCAGACGAGGAGAAACGTCAATCCGCCAAGACTGAACAACCGCCGGTGGCTGGACTAGG TCACGGCCGCGGCAAACCTCTTCCGGAGTTCTCTTCCTTCATCTCTACCCTAACCCCCCCGGCCGCCCCCGCCGTCGGACGCGGTAGAGGCGTCGGAGCT GCTGAAGGACCGCGACCCAGTCGACCTGCAGGGGAGAAGGTGCAGCAGACTGCACCAGGCCAGCCGCCGAAAAGCTCCGTTCCGTCGAACGAGCCTTATC TGCCGTCGAGTTTGAGGTCTACTCTACATAGCTTCGGTCGAGGGAAATCCGATGTACCGGTGGCTCCTGGCATACCGGAGAAGGAAGTGAATCGGCATAT TCGTAGTCCTAGGGTTAAGCCGAGAGCAGATGGCGATGATGATGGCCGAGATTCAACCAGGATTCGTCGTCTGTGTGCGTCGGCGGCGGTGGGTGAGAGG CGAGGTGGAGCAGAAGGAAGTGAAGGGAGGAGAAGAGGCGGCGAGGGAGGAATGCAGCAGATGGGAGGGAGAGGACGTGGGATGGGAATGGGGAGAGGCA GAGGAAGGGGAATGGGGAGAGGGAGGGGAAGGGGAAGGGAGAGAGGAGAGTACGGTGGCCGAGGGAGAGGTGATATACCTGGATGCTTTGGACCTCAATT TCAAGTATATATATTATGTTGTGATAGTTGTACTTGGTTCGAATTGCAGATCGAGTTTGAGGAAGAATACATGTTCGGAGAGTTTGATCTAAACCCAGAT ATTGATGAGAAACCACCTATGCCTTTGCGGGATATGCTGGAGAAAGTGAAGCCATTCTTGATGTCTTATGAAGGAATCCAGAGTCAAGCAGAGTGGGAGG AGGTGATGGAAGAAACGATGAAGAATGTCCCATTATTGAAAAAGATAGTTGATCACTACGCTGGACCTGATAGGGTAACAGCGAAACAGCAACAACAAGA GCTAGAAAGAGTTGCAGGAACTTTACCTGCAATTGCTCCTCCTTCCGTGAAACGTTTTGCTGATCGAGCCGTTATGTCTCTTCAGCTTGAGCTTTTAGCA GGGCCATGTTTTCTGACGGCATGGTCTGCAATTTTGCAGAGCAATCCAGGGTGGGGATTTGACAAGAAGTGCCAGTTTATGGACAAGCTAGTAATGCAGG TGTCTCAGCATTACAAGTGA
AA sequence Show only first row Show all	>Lus10005585 pacid=23139668 polypeptide=Lus10005585 locus=Lus10005585.g ID=Lus10005585.BGIv1.0 annot-version=v1.0 MHAKVVMMIMLLLSLLLVPSIIQPPPAVSPFPRSPFASGHEVLLTLLYPVVVHRFKFLRDVKETLLEESDRINGGDGVENNHVHSRTRLYDPNQFHRKPC FQELSVLILSLLHFRRWSRPRQRGGRRWTWSQIFTPGQFSFAADTPAADEEKRQSAKTEQPPVAGLGHGRGKPLPEFSSFISTLTPPAAPAVGRGRGVGA AEGPRPSRPAGEKVQQTAPGQPPKSSVPSNEPYLPSSLRSTLHSFGRGKSDVPVAPGIPEKEVNRHIRSPRVKPRADGDDDGRDSTRIRRLCASAAVGER RGGAEGSEGRRRGGEGGMQQMGGRGRGMGMGRGRGRGMGRGRGRGRERGEYGGRGRGDIPGCFGPQFQVYILCCDSCTWFELQIEFEEEYMFGEFDLNPD IDEKPPMPLRDMLEKVKPFLMSYEGIQSQAEWEEVMEETMKNVPLLKKIVDHYAGPDRVTAKQQQQELERVAGTLPAIAPPSVKRFADRAVMSLQLELLA GPCFLTAWSAILQSNPGWGFDKKCQFMDKLVMQVSQHYK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53645			hydroxyproline-rich glycoprote...		Lus10005585 [exp]	0	1
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	8.3	0.8413
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10021017 [exp]	9.2	0.8578
AT5G15640			Mitochondrial substrate carrie...		Lus10041498 [exp]	9.4	0.8131
AT1G67590			Remorin family protein (.1.2)		Lus10041239 [exp]	11.6	0.7741
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10014680 [exp]	13.2	0.8216
AT1G24090			RNase H family protein (.1)		Lus10020869 [exp]	15.4	0.8480
AT3G21540			transducin family protein / WD...		Lus10033802 [exp]	26.6	0.8401
AT4G35160			O-methyltransferase family pro...		Lus10025098 [exp]	27.6	0.8212
AT2G44040			Dihydrodipicolinate reductase,...		Lus10041701 [exp]	37.4	0.8125
AT2G28600			P-loop containing nucleoside t...		Lus10034162 [exp]	40.7	0.8168

Compare expression of checked genes

Lus10005585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.