Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09760 633 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G64640 595 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 285 / 1e-88 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 281 / 5e-87 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 267 / 3e-82 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 271 / 1e-81 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 266 / 2e-80 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26450 265 / 2e-80 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 263 / 6e-80 ATPME2 pectin methylesterase 2 (.1) AT1G23200 261 / 2e-79 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013720 [exp] 544 / 0 AT5G09760 322 / 6e-106 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033486 [exp] 535 / 0 AT5G09760 597 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013721 [exp] 317 / 1e-105 AT5G09760 278 / 3e-91 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020888 [exp] 324 / 4e-102 AT5G64630 563 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10006103 [exp] 279 / 2e-87 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 271 / 2e-83 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10010309 [exp] 265 / 1e-81 AT1G02810 575 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 266 / 2e-81 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020677 [exp] 265 / 3e-81 AT3G05620 681 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G061500 [exp] 699 / 0 AT5G09760 717 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.007G107300 [exp] 631 / 0 AT5G09760 690 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 288 / 2e-90 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 287 / 7e-90 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 283 / 2e-88 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G025400 [exp] 278 / 4e-86 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.002G202500 [exp] 276 / 3e-85 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G162400 [exp] 276 / 4e-85 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.014G067100 [exp] 273 / 1e-84 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 275 / 2e-84 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10005587 pacid=23139676 polypeptide=Lus10005587 locus=Lus10005587.g ID=Lus10005587.BGIv1.0 annot-version=v1.0 ATGCCGCCGACGCCTCCACCTTCCAAAAAGTCCACCAAATTCCCTTCCGCCACAGCCTTTTCTCTGCATCACATTTTCATGGCTTCCCTACTCACTCTCC TCCTCGTCTCATTCCTCCTCTTCCTTTCTTTCCCTTCTTCCTCCTCCTCTCTATCTCAACCCCGATCTCTCCGCATTTTCCGATCCCCAAAACCCAAACC CAAATCCAAACCCCCCGTCACTCGCTCTTCCTCCGTCGCACCAATCCCAGCTCAGATCCTCCAAGCATGCAAGGCCACCCGTTTTCCGGACGTATGCCAG TCTTCCCTAGCCGCCAATTCCCCCTCGGGAACCCAACAAACTCCGATTGAGATGATTCAATCGGCGATCTCCCTCTCCTCCGCCAATCTCTCCGCCGCTC AGTCGATGGTGAAGTCCATTCTCGACTCCTCATCGGGAAACATCAACCGCACCACCGCTGCCAAGAACTGCATCGAAGCCCTCGCCAACTCCAAGTACAG AACGAACTCCGCCGCTGCCGTCGAAGCACTCCGTCGCTACGGCGGCGGAGGAATCAAAGATGCCCGCGCGTGGATGAGCGCGTCGCTGCTTTACCAGTAC GACTGCTGGAACGCGCTCAAGTACGCGAACGACACGTCGGAGACTGCCCAAACGATGTCGTTTATCGACTCATTACAGACCCTCACCAGCAACGCGCTCA GCTTGATCGTTTCCTACGACATTTACGGTAACGAGACCGGGTCATGGGCCCCGCCCAAGACGGAGCGGGACGGGTTCTGGGAGAAGTCGTCGGTGGGGTC GGAAACTCACCCGGGACCCGGGTTTCCGCCGGGCATGAATCCGGACGCGACGGTGTGTAACGAGGGGTGTGATTACAAAACTGTACAAGCGGCGGTGGAT GCTTCGCCGGATAATCTGCCTTCTGGGAAGAAGTTCGTCATCAAGATAAAGGAAGGGGTTTACAAGGAGATCGTCCGGGTTCCATTGGAGAAGAGGAATT TGGTGTTCCTTGGAGATGGGATTGGGAAAACCGTTATAACCGGGTCGTTAGCCGTCGGGCAACCCGGGATTTCCACTTACAACACTGCTACCGTCGCGGT TCTTGGAGACGGATTCATGGCCAGCGGGTTGACGATCGAGAACGCAGCCGGAGCTCCGACCCACCAAGCAGTAGCCCTGAGGCTGGACAGTGATCTATCA GTGATTGAAAACTGCGAGTTCCTTGGTAACCAAGACACTCTCTACGCTCATTCACTCCGTCAATACTACAAATCGTGCCGGATCCAAGGCAATGTGGACT TCATATTCGGCAACTCGGCCGCCATCTTCGACGACTGCACAATCCTGGTGGCTCCGAGGCAAGTGAAGCCGGAGAAAGGCGAGAACAACGCTGTGACGGC TCAGGGCAGGACGGATCCTGCTCAGTCGACAGGGTTTGTGTTCCACAACTGTTTGATCAACGGCACGGAGGAGTACATGAGCCTGTACTGTAGTAAGCCC AAGGTGCACAAGAACTTCCTGGGAAGACCCTGGAAGGAGTATTCCAGGACGGTGTTCATACGTTGCAACATGGAAGCGCTGGTGAGCGCTCCAGGATGGA TGCCGTGGAGTGGAGATTTTGCGTTGGCGACTCTGTATTACGGGGAGTTTGAGAATTCCGGTGATGGTGGGTCGAATTCATCGCAGAGGGTTAGTTGGAG TAGTCAAGTGCCCAAGGAGCATGTGAATGCTTACTCGGTAGATAATTTCATTCAAGGGAATCAATGGATTCCCACCATTTGA
AA sequence Show only first row Show all	>Lus10005587 pacid=23139676 polypeptide=Lus10005587 locus=Lus10005587.g ID=Lus10005587.BGIv1.0 annot-version=v1.0 MPPTPPPSKKSTKFPSATAFSLHHIFMASLLTLLLVSFLLFLSFPSSSSSLSQPRSLRIFRSPKPKPKSKPPVTRSSSVAPIPAQILQACKATRFPDVCQ SSLAANSPSGTQQTPIEMIQSAISLSSANLSAAQSMVKSILDSSSGNINRTTAAKNCIEALANSKYRTNSAAAVEALRRYGGGGIKDARAWMSASLLYQY DCWNALKYANDTSETAQTMSFIDSLQTLTSNALSLIVSYDIYGNETGSWAPPKTERDGFWEKSSVGSETHPGPGFPPGMNPDATVCNEGCDYKTVQAAVD ASPDNLPSGKKFVIKIKEGVYKEIVRVPLEKRNLVFLGDGIGKTVITGSLAVGQPGISTYNTATVAVLGDGFMASGLTIENAAGAPTHQAVALRLDSDLS VIENCEFLGNQDTLYAHSLRQYYKSCRIQGNVDFIFGNSAAIFDDCTILVAPRQVKPEKGENNAVTAQGRTDPAQSTGFVFHNCLINGTEEYMSLYCSKP KVHKNFLGRPWKEYSRTVFIRCNMEALVSAPGWMPWSGDFALATLYYGEFENSGDGGSNSSQRVSWSSQVPKEHVNAYSVDNFIQGNQWIPTI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09760			Plant invertase/pectin methyle...		Lus10005587 [exp]	0	1
AT5G09760			Plant invertase/pectin methyle...		Lus10013720 [exp]	1.0	0.9665
AT3G61490			Pectin lyase-like superfamily ...		Lus10007922 [exp]	1.4	0.8844
AT1G48100			Pectin lyase-like superfamily ...		Lus10017109 [exp]	3.0	0.8666
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Lus10029905 [exp]	4.5	0.8298
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Lus10011960 [exp]	5.5	0.8275
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10029950 [exp]	8.5	0.8082
AT5G09760			Plant invertase/pectin methyle...		Lus10013721 [exp]	8.8	0.7872
AT1G48100			Pectin lyase-like superfamily ...		Lus10037834 [exp]	8.9	0.8624
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10035859 [exp]	13.5	0.7829
					Lus10027544 [exp]	23.7	0.7371

Compare expression of checked genes

Lus10005587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.