Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16650 144 / 1e-38 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013723 [exp] 298 / 1e-96 AT1G16650 606 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G065300 [exp] 174 / 3e-49 AT1G16650 546 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005589 pacid=23139644 polypeptide=Lus10005589 locus=Lus10005589.g ID=Lus10005589.BGIv1.0 annot-version=v1.0 ATGGACGACGGGAACAAAACGCCGGCTGGGCAGTGCAAGTACAGTTGCAGCAATGCCGGCGAGACCCTAGAGTGGATCAATGCAATAATCGGTTTCATTC AACCGTTAAACTTCTTGATAACGGCGCAAGTAGTCAATTTCTTCACGGACAGACTCTGGGAAGCTCTGGATAAGGAATGGATTGACTGCCTGCGGAACGA ACCTGTTGAGCATCTGGTTCTCATGCCTTCTGGTGCTCTTCAGGATCATTGGCCAGCTTCGCTCAAGCAATTCATTCTCACGGCCAGGTCGCTCGCGTTT CCCAGTGAGCAAGTGAACCTCCAAAAGGTTTTCTCCAAGCTCAACATAACATCGATTGAAGTTCTTTCTGCTATTGTGAGTTCAACTGCAAGTGAAGTGG GTGCAGAAATTGTTGTTGATATGGGTGCTGGGATGAGTGCAGAGAGATGGAGCTGTCTTGAGAACGATGCCGGTCTTCAGAATTTTGATTTGCATGCTTT CCGTGCTGTTTTCCAGATGTGCTTACAGCTGCTTTCGTTCCTTGTTAAGGTTCTCTTTAAACACTATCCCAGAAGCATAACTGCGAGCCCCTCGGTTGGT TGTCAAGGGAAAGCTCTTCGTCGCAAGCAGCGGAAGGGGTCTCCCTGGTCCTTGGAAAATTCTAAAGAAAATAAACATCTATTGGAATCTTCGAAGGGGA CTGGCATCAACCAGGCTACACAGCCTCTAGATTCTAGAATGGATGACAATTCTAGCTCGGAGATGGAAAGAAGTGCTACATCTGAAGGTTCATCTTGCAA TCGGACTAATAAAGTGCTTTCTGCATCTACGGACAAGTGTACTCTCTTTGAGAAATTCAGCTTGTCTGGACTCTCTCGCCTTGGCCTCGAACCCTTGGAG GAGATCAATTTTCATGAAATCTGGAGTGAAGCTCAGCCTTCGGCAGATGAGATCACAGTTCTGCCTTTAGCCGCATTGTTGTGGTTGTTGAAGAAAGGTG TGCCAGATGATATTGGCGCCGCCACACTTCCACAGTTTCGGTGTGTTCTGTTCCTAGAGGGACTGCTCACTAACGGGAGTAGTATTTCAGTTGGTCTGAA ATCGTGA
AA sequence Show only first row Show all	>Lus10005589 pacid=23139644 polypeptide=Lus10005589 locus=Lus10005589.g ID=Lus10005589.BGIv1.0 annot-version=v1.0 MDDGNKTPAGQCKYSCSNAGETLEWINAIIGFIQPLNFLITAQVVNFFTDRLWEALDKEWIDCLRNEPVEHLVLMPSGALQDHWPASLKQFILTARSLAF PSEQVNLQKVFSKLNITSIEVLSAIVSSTASEVGAEIVVDMGAGMSAERWSCLENDAGLQNFDLHAFRAVFQMCLQLLSFLVKVLFKHYPRSITASPSVG CQGKALRRKQRKGSPWSLENSKENKHLLESSKGTGINQATQPLDSRMDDNSSSEMERSATSEGSSCNRTNKVLSASTDKCTLFEKFSLSGLSRLGLEPLE EINFHEIWSEAQPSADEITVLPLAALLWLLKKGVPDDIGAATLPQFRCVLFLEGLLTNGSSISVGLKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16650			S-adenosyl-L-methionine-depend...		Lus10005589 [exp]	0	1
AT3G27050			unknown protein		Lus10032042 [exp]	3.0	0.8411
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10013583 [exp]	5.5	0.8019
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042994 [exp]	6.8	0.8326
AT2G04845			Acyl-CoA N-acyltransferases (N...		Lus10006397 [exp]	7.5	0.8262
AT3G61790			Protein with RING/U-box and TR...		Lus10002761 [exp]	12.3	0.7958
					Lus10000768 [exp]	14.1	0.7931
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Lus10011440 [exp]	20.0	0.8066
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10035942 [exp]	22.0	0.8127
AT1G69500		CYP704B1	"cytochrome P450, family 704, ...		Lus10037157 [exp]	24.7	0.8101
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10016115 [exp]	26.0	0.7733

Compare expression of checked genes

Lus10005589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.