Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14420 642 / 0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) AT3G14415 635 / 0 Aldolase-type TIM barrel family protein (.1.2.3) AT4G18360 605 / 0 Aldolase-type TIM barrel family protein (.1.2) AT3G14130 431 / 2e-151 Aldolase-type TIM barrel family protein (.1) AT3G14150 423 / 2e-148 Aldolase-type TIM barrel family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013725 [exp] 701 / 0 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10038507 [exp] 615 / 0 AT4G18360 665 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10023302 [exp] 613 / 0 AT4G18360 664 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10042495 [exp] 430 / 3e-152 AT4G18360 461 / 1e-164 Aldolase-type TIM barrel family protein (.1.2) Lus10013171 [exp] 415 / 6e-145 AT3G14130 521 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10008133 [exp] 408 / 3e-142 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10038144 [exp] 389 / 7e-136 AT4G18360 435 / 4e-154 Aldolase-type TIM barrel family protein (.1.2) Lus10037208 [exp] 261 / 2e-85 AT4G18360 303 / 6e-103 Aldolase-type TIM barrel family protein (.1.2) Lus10013724 [exp] 194 / 5e-62 AT3G14420 170 / 2e-53 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G112700 [exp] 635 / 0 AT3G14420 669 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.001G394400 [exp] 635 / 0 AT3G14420 668 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.004G065200 [exp] 619 / 0 AT3G14420 651 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.003G069600 [exp] 417 / 5e-146 AT3G14130 502 / 2e-179 Aldolase-type TIM barrel family protein (.1) Potri.003G069400 [exp] 416 / 2e-145 AT3G14130 529 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.003G069300 [exp] 401 / 1e-139 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01070 [flax] [poplar] FMN_dh FMN-dependent dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10005590 pacid=23139678 polypeptide=Lus10005590 locus=Lus10005590.g ID=Lus10005590.BGIv1.0 annot-version=v1.0 ATGGCAGTGGTAACAAATGTAACCGAGTACCAGGCGATCGCGAAGCAGAAGCTTCCGAAAATGGCGTACGATTACTACGCATCTGGTGCTGAAGATGAGT GGAGTCTTGCTGAGAACAGGAACGCCTTCGCCAGAATCCTGTTTCGACCGAGGATTCTGATAGACGTGACGAAGATCGACATGACAACAACTGTGCTAGG ATTCAAGATATCCATGCCTATCATGATTGCTCCTACTGCCTTTCAGAAAATGGCTCACCCTGATGGGGAATACGCCACTGCTAGAGCTGCATCAGCTGCT GGAACCATCATGACACTGTCATCATGGGCTACTTCAAGTGTGGAAGAGGTTGCTTCCACTGGTCCTGGAATTCGTTTTTTCCAGCTTTATGTGTACAAAG ATAGGAACGTGGTGGCTCAGCTGGTGAAGAGAGCTGAGAGGGCTGGCTTCAAGGCCATTGCTCTTACTGTTGATACCCCTAGGCTTGGCCGCAGAGAGGC TGACATCAAGAACAGATTCACATTGCCACCGAACTTGACACTGAAGAACTTTGAAGGCCTGAACCTTGGCAAGATGGACGAAGCCAATGACTCAGGGCTT GCATCTTACGTTGCTGGCCAGATTGATCGCTCCCTCAGCTGGAAGGATGTGCAATGGCTTCAAACAATCACCTCAATGCCAATTCTGGTGAAGGGTGTCC TCACAGCCGAAGATGCAAGAATAGCAGTGCAAGCTGGAGCAGCAGGGATCATAGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCATCCACCAT TAGGGCCCTGGAGGAGGTTGTGAAAGGTGCACAAGGCCGGATTCCGGTGTTCTTGGATGGTGGCGTTAGGCGTGGCACAGATGTCTTCAAGGCATTGGCA CTTGGTGCCTCTGGCATATTCATTGGACGACCGGTGGTGTTCTCGTTGGCTGCTGAGGGAGAAGCTGGAGTGAAGAATGTGCTTCAGATGCTACGTGAGG AGTTTGAGCTAACAATGGCGCTCAGCGGATGCCGTTCTCTCAAGGAAATCACTAGGGACCATATCGTTACCGATTGGGACACTCCTCGCCTCACATCCGC CAGGCTATGA
AA sequence Show only first row Show all	>Lus10005590 pacid=23139678 polypeptide=Lus10005590 locus=Lus10005590.g ID=Lus10005590.BGIv1.0 annot-version=v1.0 MAVVTNVTEYQAIAKQKLPKMAYDYYASGAEDEWSLAENRNAFARILFRPRILIDVTKIDMTTTVLGFKISMPIMIAPTAFQKMAHPDGEYATARAASAA GTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPNLTLKNFEGLNLGKMDEANDSGL ASYVAGQIDRSLSWKDVQWLQTITSMPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPSTIRALEEVVKGAQGRIPVFLDGGVRRGTDVFKALA LGASGIFIGRPVVFSLAAEGEAGVKNVLQMLREEFELTMALSGCRSLKEITRDHIVTDWDTPRLTSARL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14420			Aldolase-type TIM barrel famil...		Lus10005590 [exp]	0	1
AT3G14420			Aldolase-type TIM barrel famil...		Lus10013725 [exp]	1.0	0.9891
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10012459 [exp]	2.0	0.9709
AT5G09660		PMDH2	peroxisomal NAD-malate dehydro...		Lus10020501 [exp]	3.3	0.9448
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Lus10029728 [exp]	4.0	0.9566
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Lus10029727 [exp]	4.5	0.9551
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Lus10026241 [exp]	6.0	0.9588
AT4G25170			Uncharacterised conserved prot...		Lus10009654 [exp]	6.2	0.9428
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10022384 [exp]	6.8	0.9327
AT1G76450			Photosystem II reaction center...		Lus10030719 [exp]	6.9	0.9501
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Lus10027616 [exp]	8.2	0.9402

Compare expression of checked genes

Lus10005590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.