Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14400 617 / 0 UBP25 ubiquitin-specific protease 25 (.1) AT5G57990 212 / 7e-59 UBP23 ubiquitin-specific protease 23 (.1) AT5G65450 209 / 2e-58 UBP17 ubiquitin-specific protease 17 (.1) AT4G24560 203 / 2e-55 UBP16 ubiquitin-specific protease 16 (.1) AT1G17110 203 / 2e-55 UBP15 ubiquitin-specific protease 15 (.1.2) AT2G24640 191 / 2e-53 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G31670 190 / 3e-52 UBP18 ubiquitin-specific protease 18 (.1) AT5G46740 149 / 1e-37 UBP21 ubiquitin-specific protease 21 (.1) AT4G17895 133 / 2e-32 UBP20 ubiquitin-specific protease 20 (.1) AT4G39910 105 / 2e-24 ATUBP3 ubiquitin-specific protease 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013726 [exp] 1224 / 0 AT3G14400 641 / 0.0 ubiquitin-specific protease 25 (.1) Lus10009273 [exp] 219 / 1e-60 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10020116 [exp] 206 / 2e-57 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10026918 [exp] 203 / 1e-56 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10035825 [exp] 189 / 1e-50 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10036607 [exp] 188 / 3e-50 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10032623 [exp] 179 / 5e-47 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10043126 [exp] 177 / 8e-47 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1) Lus10043127 [exp] 175 / 9e-47 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G112800 [exp] 731 / 0 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1) Potri.001G394600 [exp] 716 / 0 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1) Potri.005G156900 [exp] 224 / 2e-62 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.002G104800 [exp] 218 / 3e-60 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.018G107500 [exp] 214 / 3e-59 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.018G009500 [exp] 211 / 3e-59 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.006G185200 [exp] 210 / 8e-58 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G270600 [exp] 199 / 2e-55 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.011G095200 [exp] 201 / 5e-55 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.001G378900 [exp] 201 / 1e-54 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10005591 pacid=23139645 polypeptide=Lus10005591 locus=Lus10005591.g ID=Lus10005591.BGIv1.0 annot-version=v1.0 ATGGGCTGCCTCCAATTGCAGATGAGTTGGCAGCCGAGTTTGTTGAGCCAGCAACGGAAGAATAGGCCGCCATTAGGGTTGAAGAATCTAGGTAACTCTT GCTACCTCAACAGTGTGCTCCAGTGCCTCACTTACACACCTCCACTCGCTAATTTCTGTCTCCGCTTACAGCACTCTTCCATCTGCGATTCAGTTTCCAA TGGGGAGCGTAAGCGGGAATGTCCCTTTTGTATTATTGAGAGGAGGATAGTCCGGTCACTAAGCTTGGAGGCCACCGTTGATACCCCTCTCAAGATAAAT AACTTCCTGCGGATTTTTGCTGAGCATTTTCGACGCGGCCGACAAGAAGATGCCCACGAGTTCTTGCGGTATGTAATTGATGCATGCCACAACACATGTT TGCGTCTCAAGAAACTGAGACGAAAAGGCATTGGTCCTGCTAGCAACCGTACTATCGTCAGTGATATATTCGGGGGTGCTCTGCAGAGTCAAGTGAAGTG TTTATCTTGTAATTCGGAGTCAAATAAGGTTGATGAGATTATGGACATTAGTCTAGAGATTTTGCACAGTAGTTCACTTTTGGAGGCGATGCACAAGTTT TTCCAGCAAGAGATTTTGGATGGCAGTAATAAGTATCAATGCGAAAGTTGTAAGAAATTAGTGGCAGCAAGGAAGCAAATGTCAATTTTTGAAGCACCAG ATGTCCTTGTCATCCAGCTTAAGAGATTTGAGGGCATATTTGGCGGGAAGATTGATAAGACCGTAGCATTTGGAGAAGTTTTGGTACTATCCAGCTTCAT GTGCAAATCAAGCCAGGACCCCCAGCCAGAGTATAGCCTCTTTGGTACTATAGTGCATTCAGGATACTCTCCTGAATCTGGACACTACTACGCTTATATC AAGGATGCAATGGGACGCTGGTACTGCTGCAATGACTCGTATGTTACCTTGTCAACCTTACAGGAGGTCTTGTCAGAGAAAGTGTATATTCTTTTCTTTT CTCGAACTAATCAAAAGCCAGTATCTACAAAGCCTGCTGTTGCTTCAAATGGAGCCCAGTCACTTGACCTGAACGGAAGCAAGGCCTCTAAAATTACTAA GGCTGCCCTCACTCCGAAATTAGGGTATCCAAGGCCACTTGCTTCGGGGAAGGATATTTTGGCCAGCTCTGACGTTGATAAATTTACTTCTAGGACACAA ATAAAGTTCAATCTTTCTGGAAATTCTGTTTCTAAGATGCTTCCTCCAATTACCAATGGGAGGGCTGTTGCGGCTAAAGCGAACTCAGAAGCTAATGGTA CCTCAGAAGGCAAGGTTCAGTCTGAGAGGCTTGGCGAAACATCAATGTCATCAGTAATCAAGCATGGGTCCAGTAGTAGCACAAAAGTTAATGTTGCCAA TGATGAGACTCACCATGCTCATACAGCTGCAGATGAAAATCAACACTCCGAAAATGGCATCATTATTCCTGTTAGGCCAACTTCGTACAAAGAGAATAAT GGCTCGTTAAGCAATGGAATAGCAAGGACGGCTCCTATTTGCATTGAAATGCCAAGTGGTGCTTCAGACTCCCGACAGCTTGTTTCTCGGTCCAAGAGAA AATTGAAGCAGAGTTCCTGTGTTTTGTTTGCTCTAGATGATCAATCAAGAGCCAAGGTTGATGAGCTGAAGGAACTTCTCGAGCAAGAATCATCTGCTTT CTTACGGTCATCTGGCTGGACTGGTGAAGTATACAATCACATGTCAAAGAAAAGATTACGTGTACAAGAAGCAGGAAGCACCAATAGCGCTGATGACTTG AAGGGCTTGTTGATTGCGGATGCTAAGCGAATGTTCAAGTCAAAGGTGCCTGGATCATTGATAGGAGATCTAGTGAAGCAACTTCAGTCATTTAGTGAAG GGAAATGA
AA sequence Show only first row Show all	>Lus10005591 pacid=23139645 polypeptide=Lus10005591 locus=Lus10005591.g ID=Lus10005591.BGIv1.0 annot-version=v1.0 MGCLQLQMSWQPSLLSQQRKNRPPLGLKNLGNSCYLNSVLQCLTYTPPLANFCLRLQHSSICDSVSNGERKRECPFCIIERRIVRSLSLEATVDTPLKIN NFLRIFAEHFRRGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGIGPASNRTIVSDIFGGALQSQVKCLSCNSESNKVDEIMDISLEILHSSSLLEAMHKF FQQEILDGSNKYQCESCKKLVAARKQMSIFEAPDVLVIQLKRFEGIFGGKIDKTVAFGEVLVLSSFMCKSSQDPQPEYSLFGTIVHSGYSPESGHYYAYI KDAMGRWYCCNDSYVTLSTLQEVLSEKVYILFFSRTNQKPVSTKPAVASNGAQSLDLNGSKASKITKAALTPKLGYPRPLASGKDILASSDVDKFTSRTQ IKFNLSGNSVSKMLPPITNGRAVAAKANSEANGTSEGKVQSERLGETSMSSVIKHGSSSSTKVNVANDETHHAHTAADENQHSENGIIIPVRPTSYKENN GSLSNGIARTAPICIEMPSGASDSRQLVSRSKRKLKQSSCVLFALDDQSRAKVDELKELLEQESSAFLRSSGWTGEVYNHMSKKRLRVQEAGSTNSADDL KGLLIADAKRMFKSKVPGSLIGDLVKQLQSFSEGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14400		UBP25	ubiquitin-specific protease 25...		Lus10005591 [exp]	0	1
AT3G09850			D111/G-patch domain-containing...		Lus10019584 [exp]	1.0	0.9263
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Lus10022388 [exp]	2.0	0.8806
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10003496 [exp]	2.0	0.8787
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Lus10027084 [exp]	3.2	0.8773
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10031562 [exp]	3.5	0.8766
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10022930 [exp]	3.9	0.8804
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10028804 [exp]	4.6	0.8716
AT4G35987			S-adenosyl-L-methionine-depend...		Lus10028446 [exp]	5.1	0.8541
AT3G47630			unknown protein		Lus10023590 [exp]	7.9	0.8381
					Lus10031226 [exp]	8.3	0.8337

Compare expression of checked genes

Lus10005591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.