Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17180 253 / 1e-85 ATGSTU25 glutathione S-transferase TAU 25 (.1) AT1G78380 251 / 6e-85 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) AT1G78360 248 / 1e-83 ATGSTU21 glutathione S-transferase TAU 21 (.1) AT1G78320 242 / 1e-81 ATGSTU23 glutathione S-transferase TAU 23 (.1) AT1G17170 242 / 2e-81 ATGSTU24 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1) AT1G78340 240 / 1e-80 ATGSTU22 glutathione S-transferase TAU 22 (.1) AT1G78370 236 / 5e-79 ATGSTU20 glutathione S-transferase TAU 20 (.1) AT1G53680 233 / 8e-78 ATGSTU28 glutathione S-transferase TAU 28 (.1) AT3G43800 227 / 1e-75 ATGSTU27 glutathione S-transferase tau 27 (.1) AT1G17190 226 / 3e-75 ATGSTU26 glutathione S-transferase tau 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026198 [exp] 268 / 2e-91 AT1G78380 295 / 3e-102 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10042470 [exp] 260 / 2e-88 AT1G78380 291 / 1e-100 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10042468 [exp] 259 / 2e-88 AT1G78380 306 / 6e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10026199 [exp] 261 / 1e-83 AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2) Lus10042469 [exp] 246 / 6e-83 AT1G78380 284 / 5e-98 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10019480 [exp] 205 / 8e-67 AT1G17180 231 / 6e-77 glutathione S-transferase TAU 25 (.1) Lus10030020 [exp] 197 / 8e-64 AT1G17180 238 / 1e-79 glutathione S-transferase TAU 25 (.1) Lus10030362 [exp] 196 / 5e-63 AT1G17170 210 / 7e-69 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1) Lus10035304 [exp] 184 / 2e-58 AT1G17180 238 / 6e-80 glutathione S-transferase TAU 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G140800 [exp] 269 / 4e-92 AT1G78380 318 / 1e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437200 [exp] 262 / 2e-89 AT1G78380 308 / 2e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G140400 [exp] 262 / 2e-89 AT1G78380 308 / 9e-108 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436600 [exp] 262 / 3e-89 AT1G78380 318 / 2e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437400 [exp] 256 / 8e-87 AT1G78380 316 / 2e-110 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436800 [exp] 254 / 5e-86 AT1G17180 308 / 2e-107 glutathione S-transferase TAU 25 (.1) Potri.001G431700 [exp] 251 / 3e-85 AT1G78380 307 / 4e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437000 [exp] 250 / 1e-84 AT1G78380 308 / 1e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437100 [exp] 250 / 1e-84 AT1G78380 304 / 7e-106 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.019G130433 [exp] 247 / 2e-83 AT1G17180 292 / 3e-101 glutathione S-transferase TAU 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10005592 pacid=23139646 polypeptide=Lus10005592 locus=Lus10005592.g ID=Lus10005592.BGIv1.0 annot-version=v1.0 ATGGGAGAGGAGGTTGTGCTGTTGAACTTCTGGCCTAGCCCTTATGGAGCAAGGGTCATGATATCGCTAGCCGAGAAGGGCATCCGTTACGACTACAAAG TCGAGGACGTGATTACCAGCAAGAGCCCTCTTCTGCTGGAGATGAACCCGGTTCACAAGAAGGTCCCTGTCCTCATCCATAATGGCAGCCCCGTTAGCGA GTCCCTCGTTATCGTTCAGTACATTGACGAGTTCTGGCCTGGCGAACGTCCGCTCCTTCCTTCTGATCCTTACCAGCGCGCCCAGGCTCGGTTCTGGGCT AACTACATTGACCAGATATTCGAGTATGGGAGGAAGATATGGCTGAAGACAGGAGAAGAGAAGGAACAAGGAAAGAAGGAGCTGATTGAATCCTTGAAAC TGATGGAAACTCAGTTGGGAGACAAGTCATTCTTCGGAGGTGAAGAGTTTGGTTATGTGGACATAGCATTCATTCCTTACTACAGCTGGTTTCATACCTA CGAACAACTCGGAAACATCAGCATCGAAGCCGAACCAAAGCTGGTCGAATGGGCAAAGAGGTGCATGAAGAGGGACAGCGTCTCCAAGGCTCTGCCTGAC CCGGTCGAGCTGTACGACCTCGTTTTGACGGTCAGGACGAAATTTCGGAATTGA
AA sequence Show only first row Show all	>Lus10005592 pacid=23139646 polypeptide=Lus10005592 locus=Lus10005592.g ID=Lus10005592.BGIv1.0 annot-version=v1.0 MGEEVVLLNFWPSPYGARVMISLAEKGIRYDYKVEDVITSKSPLLLEMNPVHKKVPVLIHNGSPVSESLVIVQYIDEFWPGERPLLPSDPYQRAQARFWA NYIDQIFEYGRKIWLKTGEEKEQGKKELIESLKLMETQLGDKSFFGGEEFGYVDIAFIPYYSWFHTYEQLGNISIEAEPKLVEWAKRCMKRDSVSKALPD PVELYDLVLTVRTKFRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10005592 [exp]	0	1
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10010111 [exp]	1.0	0.9040
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10011604 [exp]	3.9	0.7797
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Lus10018565 [exp]	6.6	0.7944
AT1G05300		ZIP5	zinc transporter 5 precursor (...		Lus10031099 [exp]	8.9	0.8122
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035207 [exp]	9.4	0.7444
AT5G01880			RING/U-box superfamily protein...		Lus10025145 [exp]	10.2	0.6440
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10011499 [exp]	11.2	0.7774
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10012615 [exp]	11.6	0.8053
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Lus10034338 [exp]	18.7	0.6703
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10027365 [exp]	18.9	0.7534

Compare expression of checked genes

Lus10005592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.