Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53670 244 / 1e-82 MSRB1, ATMSRB1 methionine sulfoxide reductase B 1 (.1.2) AT4G04830 109 / 2e-30 ATMSRB5 methionine sulfoxide reductase B5 (.1.2) AT4G21840 107 / 9e-30 ATMSRB8 methionine sulfoxide reductase B8 (.1) AT4G21830 107 / 1e-29 ATMSRB7 methionine sulfoxide reductase B7 (.1.2) AT4G04800 107 / 3e-29 ATMSRB3 methionine sulfoxide reductase B3 (.1) AT4G21850 106 / 3e-29 ATMSRB9 methionine sulfoxide reductase B9 (.1.2) AT4G21860 107 / 4e-29 MSRB2 methionine sulfoxide reductase B 2 (.1.2.3) AT4G04840 105 / 1e-28 ATMSRB6 methionine sulfoxide reductase B6 (.1) AT4G04810 102 / 1e-27 ATMSRB4 methionine sulfoxide reductase B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013727 [exp] 370 / 2e-132 AT1G53670 253 / 2e-86 methionine sulfoxide reductase B 1 (.1.2) Lus10009574 [exp] 108 / 4e-30 AT4G04830 225 / 2e-77 methionine sulfoxide reductase B5 (.1.2) Lus10020486 [exp] 108 / 3e-29 AT4G21860 254 / 1e-86 methionine sulfoxide reductase B 2 (.1.2.3) Lus10007105 [exp] 105 / 3e-28 AT4G21860 251 / 2e-85 methionine sulfoxide reductase B 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G114300 [exp] 241 / 1e-81 AT1G53670 231 / 7e-78 methionine sulfoxide reductase B 1 (.1.2) Potri.009G080700 [exp] 109 / 2e-29 AT4G21860 253 / 7e-86 methionine sulfoxide reductase B 2 (.1.2.3) Potri.008G198600 [exp] 104 / 1e-28 AT4G04830 221 / 1e-75 methionine sulfoxide reductase B5 (.1.2) Potri.001G286500 [exp] 104 / 7e-28 AT4G21860 254 / 1e-86 methionine sulfoxide reductase B 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0080 [flax] [poplar] Beta-tent PF01641 [flax] [poplar] SelR SelR domain
Representative CDS sequence Show only first row Show all	>Lus10005593 pacid=23139661 polypeptide=Lus10005593 locus=Lus10005593.g ID=Lus10005593.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTCTGTGTCACAGCACAACCAGGATTCAGCCCTTATCTGCCGCCGCAGCAGCAACTGCAAGTCTACTCTCCTCGACAGCCTCACAATTCA ATTTTCGATCAGTACGGTTGCTGAAGGAAGGCAGTAGTCGCCGCCGACGACTCACCGGATCAGTTTCTTTGTCCGTTCGCGCCATGGGTTCTTCTGCTTC CTCTCCCAAACCTAATGAAAACCTTCAAGATGCGAAGAAAGGCATTCCCTTGAGTGATGAAGACTTGAAGAAGAAACTCACACCAGAACAGTACTACGTA ACTCGGCAGAAAGGAACCGAGAGAGCTTTCACTGGGGACTACTGGAGAACCAAAACCCCAGGAACTTACCACTGCATATGTTGTGACACGCCTCTTTTCG AATCAGCAACGAAGTTTGACAGTGGAACCGGGTGGCCATCTTACTACAAGCCGATAGGTGACAATGTGAAATCGAAGCTGGACTTATCGATCATCTTCAT GCCTCGGACTGAAGTTGTATGCGCCGTTTGTGATGCTCATCTAGGACATGTTTTCAACGATGGTCCGCAGCCTACTGGCCAACGCTACTGCATCAACAGT GCTGCGCTGAAGCTAAAACCCATGGAAAAGTAA
AA sequence Show only first row Show all	>Lus10005593 pacid=23139661 polypeptide=Lus10005593 locus=Lus10005593.g ID=Lus10005593.BGIv1.0 annot-version=v1.0 MAAALCHSTTRIQPLSAAAAATASLLSSTASQFNFRSVRLLKEGSSRRRRLTGSVSLSVRAMGSSASSPKPNENLQDAKKGIPLSDEDLKKKLTPEQYYV TRQKGTERAFTGDYWRTKTPGTYHCICCDTPLFESATKFDSGTGWPSYYKPIGDNVKSKLDLSIIFMPRTEVVCAVCDAHLGHVFNDGPQPTGQRYCINS AALKLKPMEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53670		MSRB1, ATMSRB1	methionine sulfoxide reductase...		Lus10005593 [exp]	0	1
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10028633 [exp]	2.8	0.9224
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10021273 [exp]	7.4	0.8702
AT2G37240			Thioredoxin superfamily protei...		Lus10014017 [exp]	8.4	0.9119
AT5G19940			Plastid-lipid associated prote...		Lus10026221 [exp]	11.2	0.9095
AT3G54890		LHCA1	photosystem I light harvesting...		Lus10023509 [exp]	13.0	0.8931
AT3G54890		LHCA1	photosystem I light harvesting...		Lus10040391 [exp]	13.6	0.8893
AT5G11840			Protein of unknown function (D...		Lus10027492 [exp]	14.7	0.8892
AT1G74640			alpha/beta-Hydrolases superfam...		Lus10024219 [exp]	16.9	0.8930
AT1G28140			unknown protein		Lus10034291 [exp]	19.0	0.8875
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10034292 [exp]	19.4	0.8569

Compare expression of checked genes

Lus10005593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.