Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04720 64 / 2e-12 HEL, PR-4, PR4 HEVEIN-LIKE, pathogenesis-related 4 (.1) AT2G43580 42 / 0.0001 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013728 [exp] 194 / 5e-63 AT3G04720 57 / 5e-10 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10005595 [exp] 191 / 9e-62 AT3G04720 65 / 8e-13 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10005596 [exp] 167 / 4e-52 AT3G04720 66 / 6e-13 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10039212 [exp] 119 / 1e-32 AT3G04720 42 / 2e-04 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10015270 [exp] 103 / 2e-27 AT3G04720 46 / 3e-06 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10006552 [exp] 63 / 4e-12 AT3G04720 244 / 1e-82 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10026915 [exp] 57 / 1e-09 AT3G04720 66 / 5e-13 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10042694 [exp] 56 / 1e-09 AT3G04720 57 / 7e-10 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003262 [exp] 49 / 2e-07 AT3G04720 154 / 2e-48 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G041900 [exp] 71 / 6e-15 AT3G04720 251 / 1e-85 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041700 [exp] 64 / 2e-12 AT3G04720 248 / 4e-84 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.005G054000 [exp] 61 / 2e-11 AT3G04720 238 / 9e-81 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041600 [exp] 59 / 9e-11 AT3G04720 266 / 3e-91 HEVEIN-LIKE, pathogenesis-related 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF00967 [flax] [poplar] Barwin Barwin family
Representative CDS sequence Show only first row Show all	>Lus10005594 pacid=23139670 polypeptide=Lus10005594 locus=Lus10005594.g ID=Lus10005594.BGIv1.0 annot-version=v1.0 ATGGCGATGAAAATCTCTGCTACCATAGTAGTATTCGTTCTAATTCCTGCCCATATTCTGATAGCATCAACATTATCAGCAGAAGCCTGCAGTGAGCTTC CGGGCTTTAAGTGTTACGATTTCGCAAACGGGACTCATTACGGATGCAGTCCTGGGCGCTGCTGCAGTATCTACCATTACTGTGGCAACACCACTGATTA CTGTTCTGCAACAAACTGCGCATTCCAGTGTAATGATACCGTAGCGTCGCCCCCAACGGCGGCCGCAATGTTATCGATTAATAATGTTACTAACACAGTC GTCAAGGTTACGCGTAACGAGTACTACGATCATGATCAAATCGCTTCGTTATCGTGTGTGGATTCTCTGAAAAATTTGTCATCGGAATCGCTTCACAAGT ATGCATGGACCTCTTTGCGTGTCAACAATGCTGCTACTTCTACTTGCGGCCAATGCTTAAAGGTGACGAATATTAAAACTGGAGTTGAAGCAATGGTACG AGTTGTCCATGAACCTACTACTACTGCTACTGATCAGCTTGGACTTGAACTAGGCACTGCTACTTTTAACGAACTCCATATTAACAATGACCGTGATCAT GAAGACCTTGTCGTCGTCAAGTACAACTTTGAAAGCTGTGATTGA
AA sequence Show only first row Show all	>Lus10005594 pacid=23139670 polypeptide=Lus10005594 locus=Lus10005594.g ID=Lus10005594.BGIv1.0 annot-version=v1.0 MAMKISATIVVFVLIPAHILIASTLSAEACSELPGFKCYDFANGTHYGCSPGRCCSIYHYCGNTTDYCSATNCAFQCNDTVASPPTAAAMLSINNVTNTV VKVTRNEYYDHDQIASLSCVDSLKNLSSESLHKYAWTSLRVNNAATSTCGQCLKVTNIKTGVEAMVRVVHEPTTTATDQLGLELGTATFNELHINNDRDH EDLVVVKYNFESCD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10005594 [exp]	0	1
					Lus10007977 [exp]	6.8	0.9096
AT3G15260			Protein phosphatase 2C family ...		Lus10005405 [exp]	7.7	0.9488
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10032006 [exp]	10.3	0.9442
AT1G72890			Disease resistance protein (TI...		Lus10019142 [exp]	12.2	0.9343
AT5G45690			Protein of unknown function (D...		Lus10005416 [exp]	12.4	0.9312
AT1G29680			Protein of unknown function (D...		Lus10005415 [exp]	12.5	0.9255
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10008291 [exp]	12.8	0.9381
					Lus10023665 [exp]	16.0	0.9002
AT5G40230			nodulin MtN21 /EamA-like trans...		Lus10033412 [exp]	17.2	0.9345
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	20.8	0.9421

Compare expression of checked genes

Lus10005594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.