Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005595 [exp] 116 / 2e-32 AT3G04720 65 / 8e-13 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10005594 [exp] 111 / 3e-30 AT3G04720 69 / 3e-14 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10013728 [exp] 103 / 2e-27 AT3G04720 57 / 5e-10 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10039212 [exp] 78 / 6e-17 AT3G04720 42 / 2e-04 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10020111 [exp] 46 / 5e-06 AT3G04720 45 / 8e-06 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10020113 [exp] 44 / 2e-05 AT3G04720 52 / 6e-08 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10015270 [exp] 43 / 8e-05 AT3G04720 46 / 3e-06 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10027643 [exp] 41 / 0.0003 ND / Lus10026915 [exp] 41 / 0.0003 AT3G04720 66 / 5e-13 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF00967 [flax] [poplar] Barwin Barwin family
Representative CDS sequence Show only first row Show all	>Lus10005596 pacid=23139639 polypeptide=Lus10005596 locus=Lus10005596.g ID=Lus10005596.BGIv1.0 annot-version=v1.0 ATGGCGAAAATCACTGGTTACTGCATAGTACTAGTAGCTCTGTTTGTGATGGCATCAACATCATCATCAGCCATGGAGCTTCCGGACCATAAGTGCTACC ATTTCCCTAACAACGCGACCCGTTTCGGGTGCGATGTAGGGCGCTGCTGCAGTTCCTCCCATTACTGCGGCACCACCGATGATTACTGTTACCAATGTAA CTGTTTATTCCAGTGTACTGCACTTTGTCCACCTGAAGTGCCATCCATTGATAATGTTACTACTACTACTACTACTACAGTACTTGTCAAGGTTACGCGT AACGAGTTCTACAATCATGATCGAAGCAGCAATTATGGTGTTGCTGCTTCTTCGTTATCCTGTGCGAATTCTCTGAAAAAATTGTCATTGGCATCGCTGC ACAAGTATGCATGGGCTTCTTTCCCAACTATAAGCAACGATATTGATACAGCTTGCGGTCGGTGCTTAAAGTTGACGAATGTTAGAACTGGAGTTGAAGC AGTGGTCCGAGTTGTCCATGAAACTAGTACTGATGAATCTGATCAGGGACTTCAATTGGGGACTGCTACTTTCAACAAACTCCATGATGCAGACGATGAT GATCATCACATTGCCGTCAAGTACAACTTCGAAAGTTGTGACTGA
AA sequence Show only first row Show all	>Lus10005596 pacid=23139639 polypeptide=Lus10005596 locus=Lus10005596.g ID=Lus10005596.BGIv1.0 annot-version=v1.0 MAKITGYCIVLVALFVMASTSSSAMELPDHKCYHFPNNATRFGCDVGRCCSSSHYCGTTDDYCYQCNCLFQCTALCPPEVPSIDNVTTTTTTTVLVKVTR NEFYNHDRSSNYGVAASSLSCANSLKKLSLASLHKYAWASFPTISNDIDTACGRCLKLTNVRTGVEAVVRVVHETSTDESDQGLQLGTATFNKLHDADDD DHHIAVKYNFESCD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10005596 [exp]	0	1
					Lus10003695 [exp]	1.4	1.0000
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10008978 [exp]	2.4	1.0000
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040724 [exp]	3.0	1.0000
					Lus10020958 [exp]	3.5	1.0000
					Lus10021906 [exp]	3.9	1.0000
AT4G35700	C2H2ZnF	DAZ3	DUO1-activated zinc finger 3, ...		Lus10041633 [exp]	4.2	1.0000
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10014436 [exp]	8.4	1.0000
AT1G10385			Vps51/Vps67 family (components...		Lus10017692 [exp]	8.8	0.9159
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10015428 [exp]	8.9	1.0000
AT5G41600		RTNLB4, BTI3	Reticulan like protein B4, VIR...		Lus10002188 [exp]	9.2	0.8781

Compare expression of checked genes

Lus10005596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.