Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58470 228 / 2e-75 nucleic acid binding;methyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000248 [exp] 336 / 3e-118 AT3G58470 288 / 8e-99 nucleic acid binding;methyltransferases (.1) Lus10016230 [exp] 266 / 4e-91 AT3G58470 204 / 4e-66 nucleic acid binding;methyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063600 [exp] 244 / 4e-82 AT3G58470 282 / 2e-96 nucleic acid binding;methyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10237 [flax] [poplar] N6-adenineMlase Probable N6-adenine methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10005597 pacid=23158753 polypeptide=Lus10005597 locus=Lus10005597.g ID=Lus10005597.BGIv1.0 annot-version=v1.0 ATGGAAGAGCAACAGACGTTAGGACATGAGGGCGCCTCCGCCGGCGTAGCAGAAGAAACGCGCCGACGAAGAAGACGAAGAGCCGACGCTGAGCTTGCGC GCCATCGTAGCTCTTCAACAGTTCCTAGCGGAGCAGAAGAAACAAACGGGGAGACTTCTGTGGAGCTGGTCTCAGAAGATTTGAGGCTGAGCCAGTTCTG GTACGAGAAGTCAACTGCCGAGACTGTAGCTAAAGAAGTCATTTCCCTGTGCGGCGATTCTGGCCGGAAAATTGATCCGAATCTGAGCGTTCAATTGCTG GAGTACGATGAGCGGTTCGGGAGGTACAGAGGTGATTTCACGTTTTACGATTACAACAAGCCGGAGGAGCTTCCGGCGGAGTTGAAGCAATGTTTCAGTG TTGTGGTAGCTGATCCTCCTTATTTGAGTAAGGAGTGTTTAGAGAAGGTTGCAGAGACGGTTTCTTTTCTTGCAAAACCTGATCCTAGCAACTCATACGT GCTTCTGCTCACAGGGGAAGTGCAGAAGCAAAGGGCTGCTGAACTGTTGGGACTGCGTCCGTGCGGGTTCCGGCCTCAGCATTCGAGCAAACTCGGGAAC GAGTTTCGGTTGCTTACCAACTATAACCCCGGGACGAGATTAGGAGGATGGGAACTCTAA
AA sequence Show only first row Show all	>Lus10005597 pacid=23158753 polypeptide=Lus10005597 locus=Lus10005597.g ID=Lus10005597.BGIv1.0 annot-version=v1.0 MEEQQTLGHEGASAGVAEETRRRRRRRADAELARHRSSSTVPSGAEETNGETSVELVSEDLRLSQFWYEKSTAETVAKEVISLCGDSGRKIDPNLSVQLL EYDERFGRYRGDFTFYDYNKPEELPAELKQCFSVVVADPPYLSKECLEKVAETVSFLAKPDPSNSYVLLLTGEVQKQRAAELLGLRPCGFRPQHSSKLGN EFRLLTNYNPGTRLGGWEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58470			nucleic acid binding;methyltra...		Lus10005597 [exp]	0	1
AT1G27900			RNA helicase family protein (....		Lus10036991 [exp]	12.3	0.6619
AT4G38440		IYO	MINIYO, unknown protein		Lus10023985 [exp]	12.5	0.6704
AT3G61960			Protein kinase superfamily pro...		Lus10030182 [exp]	32.3	0.6263
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10010858 [exp]	33.2	0.6447
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Lus10023549 [exp]	42.3	0.6503
AT1G76630			Tetratricopeptide repeat (TPR)...		Lus10025170 [exp]	47.0	0.6454
AT1G73400			Pentatricopeptide repeat (PPR)...		Lus10019141 [exp]	54.7	0.6431
AT2G36370			ubiquitin-protein ligases (.1)		Lus10035561 [exp]	62.0	0.6277
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10012029 [exp]	76.3	0.5257
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10003676 [exp]	94.1	0.5942

Compare expression of checked genes

Lus10005597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.