Plant FIBer expression Database

Lus10005598 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G44150 123 / 4e-34 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039868
[exp]
244 / 7e-81 AT5G44150 201 / 2e-61 unknown protein
Lus10038027
[exp]
233 / 2e-78 AT5G44150 123 / 2e-33 unknown protein
Lus10018632
[exp]
227 / 5e-74 AT5G44150 202 / 6e-62 unknown protein
Lus10035461
[exp]
195 / 6e-64 AT5G44150 91 / 1e-23 unknown protein
Lus10011074
[exp]
179 / 4e-58 AT5G44150 84 / 1e-19 unknown protein
Lus10014193
[exp]
108 / 5e-31 AT5G44150 50 / 2e-08 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G017200
[exp]
102 / 2e-25 AT5G44150 137 / 2e-36 unknown protein
PFAM info
Representative CDS sequence
>Lus10005598 pacid=23158762 polypeptide=Lus10005598 locus=Lus10005598.g ID=Lus10005598.BGIv1.0 annot-version=v1.0
ATGGACGCCAAATCACCGGCGAAGTCCAAGCGAGCTCACTCTCTACACCACAACAAGAAGCCACACCCGTCTCGTAAACCAACCGGTTTAGCTACTACAG
GAAAAGAAGCTGCCTTGCTCGCTTTGCCGTCGAATTCCCATCGTTACGAGGAAGAGTTTGATTCAGATTCGGCGGAAATGTCAGTTAAGACCTCCGATGT
AGCGTTGCCGAAGAGCAAAGGTACAGATTACCGCCATATGCTTGTTGAAGCTCAATCTCCGCCGATTTCTAGTGGCTTCTTGGACAACTTGTTTTCTCTG
GACGATGTTATGCCTGATGAATTCAAACACTCGTTAGGTCTGATGCTTTCAGCAAGAGGAGAGGGAATCTTGTCATGGATTTTGAATGATAATTTCATTG
TGGAAGACGATATTGGAGCGAATGCTACTCAGGAGGTAATCGACTTGCTACTGAGGATGCGAGAGCCGAGAGGGAGCATGATCGGGCTCAAAATTAGGCT
CAAAATTAAAGATTGGGTTGAGTTGGGTTGTTTCAGGGTTAAAACTAAATGA
AA sequence
>Lus10005598 pacid=23158762 polypeptide=Lus10005598 locus=Lus10005598.g ID=Lus10005598.BGIv1.0 annot-version=v1.0
MDAKSPAKSKRAHSLHHNKKPHPSRKPTGLATTGKEAALLALPSNSHRYEEEFDSDSAEMSVKTSDVALPKSKGTDYRHMLVEAQSPPISSGFLDNLFSL
DDVMPDEFKHSLGLMLSARGEGILSWILNDNFIVEDDIGANATQEVIDLLLRMREPRGSMIGLKIRLKIKDWVELGCFRVKTK

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G44150 unknown protein Lus10005598
[exp]
0 1
AT2G13370 CHR5 chromatin remodeling 5 (.1) Lus10009712
[exp]
11.8 0.8909
AT3G19700 IKU2 HAIKU2, Leucine-rich repeat pr... Lus10012461
[exp]
12.0 0.8109
AT4G17140 pleckstrin homology (PH) domai... Lus10011036
[exp]
14.1 0.8738
AT3G17920 Outer arm dynein light chain 1... Lus10041989
[exp]
27.3 0.8012
AT2G07675 Ribosomal protein S12/S23 fami... Lus10002330
[exp]
33.5 0.8492
AT4G17140 pleckstrin homology (PH) domai... Lus10003007
[exp]
34.3 0.8472
Lus10024939
[exp]
39.2 0.7918
AT4G02710 Kinase interacting (KIP1-like)... Lus10042627
[exp]
44.8 0.8098
AT1G24300 GYF domain-containing protein ... Lus10035191
[exp]
46.0 0.8455
AT4G25650 TIC55-IV, PTC52... TRANSLOCON AT THE INNER ENVELO... Lus10004251
[exp]
49.3 0.7481

Lus10005598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.