Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20710 92 / 2e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G02150 85 / 5e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 80 / 3e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G60770 79 / 1e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27460 76 / 1e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21705 68 / 4e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 67 / 7e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 62 / 7e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 54 / 5e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11380 51 / 3e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029313 [exp] 258 / 2e-86 AT2G20710 127 / 2e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10000247 [exp] 234 / 7e-80 AT2G20710 92 / 3e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10016229 [exp] 147 / 2e-43 AT2G20710 269 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003590 [exp] 99 / 4e-25 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000091 [exp] 95 / 9e-24 AT4G21705 426 / 8e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005855 [exp] 95 / 1e-23 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001213 [exp] 89 / 2e-21 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008724 [exp] 85 / 9e-20 AT5G27460 492 / 6e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018588 [exp] 79 / 1e-17 AT2G20710 303 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063300 [exp] 131 / 1e-36 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G051700 [exp] 114 / 4e-32 AT2G20710 151 / 1e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G133000 [exp] 110 / 2e-29 AT2G20710 310 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132500 [exp] 110 / 3e-29 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G063400 [exp] 108 / 2e-28 AT2G20710 349 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132700 [exp] 104 / 6e-27 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G050300 [exp] 97 / 3e-24 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G120900 [exp] 95 / 1e-23 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G042500 [exp] 94 / 2e-23 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 90 / 8e-22 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10005600 pacid=23158754 polypeptide=Lus10005600 locus=Lus10005600.g ID=Lus10005600.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAAGATGAAGTCTTTGCAGTTTGGGAACATCTCAAGAAGAGCGGGAAGAAGGTCCTCAACAAAGGGTACAGGGACGTGATATCTTCCCTCG CGAAGCTGGGCGATTTCGAGGCTGCTGAGAAGATACTCGACGAGTGGGAGTCTCGAAAGAGCCCTGGTTACGATGTCCGTGTCCCTAACGTCCTCGTCGG CGCCTACATGAAAGTCGGCCGCTTGGAAGAGGCCGAGGCAGTCGTGGAGAGGACGAGATCGAAAGGCGTTGAGCCACATGCGAACTCGTGGCTTTCGTTG GCGGGAGGGTATCTCGAGCATCGTAAGGACGTGGTGAAGGCCGTGGAGGCTATAAAGAGAGGCGTAACAGTGTCGGAGTCGGGTTGGAAACCAGATCCCA GAGGGTTGGCTGAGTGTCTGCAGTAG
AA sequence Show only first row Show all	>Lus10005600 pacid=23158754 polypeptide=Lus10005600 locus=Lus10005600.g ID=Lus10005600.BGIv1.0 annot-version=v1.0 MGKKDEVFAVWEHLKKSGKKVLNKGYRDVISSLAKLGDFEAAEKILDEWESRKSPGYDVRVPNVLVGAYMKVGRLEEAEAVVERTRSKGVEPHANSWLSL AGGYLEHRKDVVKAVEAIKRGVTVSESGWKPDPRGLAECLQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10005600 [exp]	0	1
					Lus10030974 [exp]	7.1	0.5980
AT4G21870			HSP20-like chaperones superfam...		Lus10018346 [exp]	11.5	0.6157
AT3G44160			Outer membrane OMP85 family pr...		Lus10004104 [exp]	11.5	0.6267
AT3G19620			Glycosyl hydrolase family prot...		Lus10002127 [exp]	25.5	0.5936
					Lus10008791 [exp]	32.6	0.5914
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	35.7	0.5914
					Lus10002152 [exp]	38.5	0.5522
					Lus10021851 [exp]	38.6	0.5914
					Lus10010117 [exp]	39.1	0.5522
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	39.8	0.5522

Compare expression of checked genes

Lus10005600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.