Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005601 pacid=23158752 polypeptide=Lus10005601 locus=Lus10005601.g ID=Lus10005601.BGIv1.0 annot-version=v1.0 ATGTTACCGACTAACTACTGTTATAACTATATTAGTCCAAGTGGTTATGGCATGTTTGGCTCATCGCGTATTGACATGTGGGAATGCAAGAATTTGCTGG ACGGGTTACGCTTCGGTTCTTTACAGAGAATTGAGATATCCTTGAGGAATGATAGAACTCGTATTTCGAGGGAGCCCTTCTGTTGGAAGTGGTTCAATTT GTGGGTGCCATGGATCTTTTTGATTGGATGGGAAGCAACTTCAAAGACATCTGTTTGCTATATAGTGGTTCAATTCGTGGGCGCAATGGATCTTTTTATT GGATGGGAAGCAACTTCAAAGACATCTGTTTGCTATATAGTGGTTCAATTCGTGGGCGCAATGGATCTTTTTATTGGATGGGAAGCAACTTCAAAGACAT CTGTTTGCTATATAGTGGTTCAATTCGTGGGCGCAATGGATCTTTTTATTGGATGGGAAGCAACTTCAAAGACATCTGTTTGCTATATAGTGGTTCAATT CGTGGGCGCAATGGATCTTTTTATTGGATGGGAAGCAACTTCAAAGACATCTGTTTGCTATATAGTGGTTCAATTCGTGGGCGCAATGGATCTTTTTATT GGATGGGAAGCAACTTCAAAGACATCTGTTTGCTATATAGTGGTTCAATTCGTGGGCGCAATGGATCTTTTTATTGGATGGGAAGCAACTTCAAAGACAT CTGTTTGCTATATAGTGGTTCAATTCGTGGGCGCAATGGATCTTTTTATTGGATGGGAAGCAACTTCAAAGACATTCGTTTGCTGA
AA sequence Show only first row Show all	>Lus10005601 pacid=23158752 polypeptide=Lus10005601 locus=Lus10005601.g ID=Lus10005601.BGIv1.0 annot-version=v1.0 MLPTNYCYNYISPSGYGMFGSSRIDMWECKNLLDGLRFGSLQRIEISLRNDRTRISREPFCWKWFNLWVPWIFLIGWEATSKTSVCYIVVQFVGAMDLFI GWEATSKTSVCYIVVQFVGAMDLFIGWEATSKTSVCYIVVQFVGAMDLFIGWEATSKTSVCYIVVQFVGAMDLFIGWEATSKTSVCYIVVQFVGAMDLFI GWEATSKTSVCYIVVQFVGAMDLFIGWEATSKTSVCYIVVQFVGAMDLFIGWEATSKTFVC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005601 [exp]	0	1
					Lus10008200 [exp]	4.6	0.9451
AT3G58470			nucleic acid binding;methyltra...		Lus10016230 [exp]	7.9	0.8909
AT1G77800			PHD finger family protein (.1....		Lus10009785 [exp]	10.0	0.9316
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Lus10008240 [exp]	10.4	0.9271
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10002605 [exp]	12.2	0.9387
AT1G21580			Zinc finger C-x8-C-x5-C-x3-H t...		Lus10000969 [exp]	14.5	0.8962
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040892 [exp]	17.3	0.9331
AT5G24740			Protein of unknown function (D...		Lus10003835 [exp]	23.3	0.9297
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010375 [exp]	23.4	0.9157
AT1G58230			binding (.1)		Lus10042867 [exp]	24.1	0.9268

Compare expression of checked genes

Lus10005601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.