Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14940 553 / 0 Major facilitator superfamily protein (.1) AT3G01350 522 / 0 Major facilitator superfamily protein (.1) AT1G22540 365 / 8e-120 Major facilitator superfamily protein (.1) AT1G72140 353 / 2e-115 Major facilitator superfamily protein (.1) AT1G72125 350 / 3e-114 Major facilitator superfamily protein (.1) AT1G72120 339 / 6e-110 Major facilitator superfamily protein (.1) AT1G72130 337 / 2e-109 Major facilitator superfamily protein (.1.2) AT2G37900 332 / 4e-107 Major facilitator superfamily protein (.1) AT1G22550 328 / 1e-105 Major facilitator superfamily protein (.1) AT3G53960 322 / 9e-103 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039465 [exp] 801 / 0 AT5G14940 489 / 1e-168 Major facilitator superfamily protein (.1) Lus10014510 [exp] 692 / 0 AT5G14940 592 / 0.0 Major facilitator superfamily protein (.1) Lus10032177 [exp] 681 / 0 AT5G14940 597 / 0.0 Major facilitator superfamily protein (.1) Lus10016932 [exp] 377 / 7e-122 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10008252 [exp] 360 / 7e-118 AT1G22540 641 / 0.0 Major facilitator superfamily protein (.1) Lus10009462 [exp] 336 / 2e-108 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10024340 [exp] 328 / 3e-105 AT2G37900 775 / 0.0 Major facilitator superfamily protein (.1) Lus10012663 [exp] 320 / 2e-102 AT2G37900 696 / 0.0 Major facilitator superfamily protein (.1) Lus10024156 [exp] 298 / 1e-93 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G068500 [exp] 625 / 0 AT5G14940 631 / 0.0 Major facilitator superfamily protein (.1) Potri.017G152800 [exp] 619 / 0 AT5G14940 645 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106600 [exp] 357 / 8e-117 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 357 / 2e-116 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106500 [exp] 344 / 1e-111 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079600 [exp] 342 / 5e-111 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079700 [exp] 341 / 2e-110 AT1G22540 547 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106400 [exp] 337 / 5e-109 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.006G092000 [exp] 336 / 3e-108 AT2G37900 777 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106925 [exp] 335 / 4e-108 AT1G22540 605 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10005603 pacid=23158758 polypeptide=Lus10005603 locus=Lus10005603.g ID=Lus10005603.BGIv1.0 annot-version=v1.0 ATGCCACCGCCTCAACAAACCATGCTGCCTCCTCATCGTTGTCTTGGTGTTGAAACAGTGATTGCTGGAGTGGAGAGGTTTGCATTCAAAGGAGTAGCAT CAAACTTGGTGACATACATGACAGATGTTGTTAAGATGACCAATTCAAGTGCTGCAAAGACGGTCAATAACTGGATTGGCTTCACTGCCATGCTCCCTCT CCTCGTCGCTTCCCTTGCAGATTCCTATTGGGGACGCTCCTCTACCATCTTGGCCTCTTGTTTCCTTTACGTTGTTGGACTAGGGGCATTGACATCAACC GCGTTGACGTGGGGAGCGTCTCCATCAAGCAGTATGAGCTATTCATTCCTTTTTGGGTCGCTGTGTCTCATCTCTCTAGGACAGGGCGGATACAACCCAT CCTTACAAGCCTTTGGAGCAGAGCAATTGGATGATAGTGAGGATGAACTTCCATGCAACGACAACATTAACAAGTCCAGCCTCAAGACTCTCTTCTTCCA GTGGTGGTACTTTGGCGTATGCGCTGGAAGCTTAATGGGTGTTATGGTCATGTGCTACATTCAGGACACTGTAGGATGGGTCATAGGATTCACTATCCCG ACCCTTTCGATGATCGCGTCAATGGCATTGTTCTGCTTAGGTACCAACATTTACCGCTATAAACAAAGCCAGGATTGCATCTCCAGAAGGCCATTCCTCA GCTTTGTTCGTGTCTTTAAGGATGCTGCCAATAAGGTTAAGGTTTGTCGAATCGCTTTGTCTTCCGTGAAACCTGATGGCTCTGAGCTAGAGCTTCAAGA ACAGGCTCTCTGTAGTGGAGAAAAGTACAACAATGCAGTGAAGACAGTGGCAATGGAGGAAAAGTGTTCAGCAAATGGGACAGAATTTGTACAAAATGTG AAAACTTTGATGAGTCTGCTCCCAATTTGGGGGATGTTGTTGCCATTTGCAGTCATATTCCAACAACCAGCCACCTTCTTTACAAAGCAGGGGATGACTA TGGAAAGAAGTATCGGAACAAATTTCATTATCCCCCCTGCTACTCTGCAAAGCTCAATTACCATCTCAATCATACTACTGATGCCTCTCTACGACAAGAT TCTGATCCCCATGTCAAAATTCGTAACTCGTAGCGAAAAGGGGATCAGCGTGATGCAGAGGATGGGAATTGGGATGTGCCTTTCAGTGATAGCCATGATC ATCGCGGCCTTAGTTGAAGAGAAGAGGTTAGAAATATGCAGAGAAGAGGACCAAACAGATAGTACTAATAGTAATGTCCCGATGAAGATATTCTGGCTGC TTCCTCAGTATATTCTGTTGGGGATTTCAGACATATTCACGGTGGTTGGAATGCAGGAGTTCTTCTATGGAGAAGTTCCGGTAAAGTTGAGAACTTTAGG GATTGCTCTGTACACTAGTGTTTTTGGTGTGGGCAGCTTCATGAGCGCAATTTTGATATGTTTGGTGGAGGTGTATGCTAGTTGGAGGAAGGAGAAGAGT TGGTTTAGTGACGATATGAGGGAAGCTCGGCTTGATAAGTACTATTGGTTTCTGGCGATCCTGAGTTCTGTGAGCTTGCTTTTGTATTTCATATTGTGCA AGTTTTACAGGAGTAAGAGTGACTATGAACTGGTGGTGCAGGATGATGACGTTGATGATGATGATGATGGACCTTAG
AA sequence Show only first row Show all	>Lus10005603 pacid=23158758 polypeptide=Lus10005603 locus=Lus10005603.g ID=Lus10005603.BGIv1.0 annot-version=v1.0 MPPPQQTMLPPHRCLGVETVIAGVERFAFKGVASNLVTYMTDVVKMTNSSAAKTVNNWIGFTAMLPLLVASLADSYWGRSSTILASCFLYVVGLGALTST ALTWGASPSSSMSYSFLFGSLCLISLGQGGYNPSLQAFGAEQLDDSEDELPCNDNINKSSLKTLFFQWWYFGVCAGSLMGVMVMCYIQDTVGWVIGFTIP TLSMIASMALFCLGTNIYRYKQSQDCISRRPFLSFVRVFKDAANKVKVCRIALSSVKPDGSELELQEQALCSGEKYNNAVKTVAMEEKCSANGTEFVQNV KTLMSLLPIWGMLLPFAVIFQQPATFFTKQGMTMERSIGTNFIIPPATLQSSITISIILLMPLYDKILIPMSKFVTRSEKGISVMQRMGIGMCLSVIAMI IAALVEEKRLEICREEDQTDSTNSNVPMKIFWLLPQYILLGISDIFTVVGMQEFFYGEVPVKLRTLGIALYTSVFGVGSFMSAILICLVEVYASWRKEKS WFSDDMREARLDKYYWFLAILSSVSLLLYFILCKFYRSKSDYELVVQDDDVDDDDDGP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14940			Major facilitator superfamily ...		Lus10005603 [exp]	0	1
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10020750 [exp]	3.9	0.7845
AT2G07680		ATMRP11, ABCC13	ATP-binding cassette C13, mult...		Lus10041661 [exp]	5.2	0.7686
AT5G14940			Major facilitator superfamily ...		Lus10039465 [exp]	10.0	0.7142
AT2G38890			unknown protein		Lus10023488 [exp]	16.3	0.7042
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10007327 [exp]	16.7	0.6960
AT5G66440			unknown protein		Lus10040435 [exp]	18.4	0.7005
AT5G02140			Pathogenesis-related thaumatin...		Lus10003962 [exp]	18.8	0.7725
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10038242 [exp]	26.4	0.7537
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Lus10029101 [exp]	27.9	0.6029
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10001056 [exp]	31.0	0.7157

Compare expression of checked genes

Lus10005603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.