Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014508 [exp] 221 / 6e-75 ND / Lus10032178 [exp] 219 / 3e-74 ND / Lus10039454 [exp] 188 / 5e-62 AT1G24020 43 / 1e-05 MLP-like protein 423 (.1.2) Lus10015339 [exp] 183 / 4e-60 ND 41 / 6e-05 Lus10016840 [exp] 94 / 8e-25 AT1G24020 58 / 5e-11 MLP-like protein 423 (.1.2) Lus10037715 [exp] 89 / 8e-23 AT1G24020 54 / 2e-09 MLP-like protein 423 (.1.2) Lus10016839 [exp] 83 / 1e-20 ND / Lus10003187 [exp] 56 / 4e-10 AT5G45860 46 / 1e-06 regulatory components of ABA receptor 5, PYR1-like 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G212100 [exp] 100 / 1e-27 AT1G24020 50 / 6e-08 MLP-like protein 423 (.1.2) Potri.010G000400 [exp] 99 / 5e-27 AT1G24020 66 / 4e-14 MLP-like protein 423 (.1.2) Potri.010G000200 [exp] 95 / 3e-25 AT1G24020 65 / 1e-13 MLP-like protein 423 (.1.2) Potri.008G213100 [exp] 89 / 1e-22 AT1G24020 52 / 1e-08 MLP-like protein 423 (.1.2) Potri.004G021100 [exp] 87 / 4e-22 AT1G24020 53 / 4e-09 MLP-like protein 423 (.1.2) Potri.014G152800 [exp] 82 / 2e-20 AT1G24020 54 / 1e-09 MLP-like protein 423 (.1.2) Potri.011G025966 [exp] 79 / 6e-19 AT1G24020 55 / 7e-10 MLP-like protein 423 (.1.2) Potri.011G025900 [exp] 79 / 6e-19 AT1G24020 55 / 7e-10 MLP-like protein 423 (.1.2) Potri.011G026032 [exp] 78 / 1e-18 AT1G24020 53 / 4e-09 MLP-like protein 423 (.1.2) Potri.016G046500 [exp] 78 / 1e-18 AT1G24020 50 / 4e-08 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10005608 pacid=23158760 polypeptide=Lus10005608 locus=Lus10005608.g ID=Lus10005608.BGIv1.0 annot-version=v1.0 ATGGGAGTGACGAGCGCAACCCACGAGTTCAAATCATGCATCTCAGCCCCGAGAATGTACAAAGCTCTCTTAGACAGTGCTGCCCTCTTCCCTAAGATAA TCCCAGAATACAAGAGTGAGTTCATTCAAGGTGACGGAGCTGTTGGCAGCATCCGCCTCACTACTTTCCCTCTTCAAGATCAAGTGACTTCAATGAAGCA TAGAGTGGATGCTCAAGACCCAGCTCAGTATTACGGCAAGTACACTTTGGTTGAAGGGGGTCCGTTGACCACTGATTCAAACTTGGAATCAGTAGTGAAT GAGGTGAAGATTGATGCAGCTGCAGCTGGTGATGGTTGTATTGTCAAAGCAACTAACCATTTTCATACAAAGGAAAAAGAAGCCAACCTTAAGGAATTGA TTGAAACAACTGGTCAACAGACTTTGGCTCTCTACAAGGCTGTTGAATCCTACCTCTTGTCCAACCCCACCACTTACGCCTAG
AA sequence Show only first row Show all	>Lus10005608 pacid=23158760 polypeptide=Lus10005608 locus=Lus10005608.g ID=Lus10005608.BGIv1.0 annot-version=v1.0 MGVTSATHEFKSCISAPRMYKALLDSAALFPKIIPEYKSEFIQGDGAVGSIRLTTFPLQDQVTSMKHRVDAQDPAQYYGKYTLVEGGPLTTDSNLESVVN EVKIDAAAAGDGCIVKATNHFHTKEKEANLKELIETTGQQTLALYKAVESYLLSNPTTYA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005608 [exp]	0	1
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10000880 [exp]	1.4	0.9001
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016224 [exp]	2.4	0.8750
AT1G70890		MLP43	MLP-like protein 43 (.1)		Lus10012467 [exp]	2.4	0.8884
AT2G27550		ATC	centroradialis (.1)		Lus10015520 [exp]	3.7	0.8088
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Lus10019064 [exp]	4.0	0.8263
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10024728 [exp]	4.2	0.8290
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10001110 [exp]	4.9	0.8561
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031162 [exp]	7.0	0.8284
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10006821 [exp]	7.1	0.8137
					Lus10008440 [exp]	7.3	0.8244

Compare expression of checked genes

Lus10005608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.