Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006294 [exp] 248 / 3e-84 ND / Lus10005396 [exp] 226 / 7e-75 ND / Lus10012407 [exp] 224 / 9e-73 ND / Lus10023808 [exp] 212 / 2e-70 ND / Lus10021548 [exp] 201 / 7e-65 ND / Lus10007789 [exp] 191 / 6e-60 ND / Lus10005712 [exp] 142 / 2e-41 ND / Lus10005130 [exp] 139 / 7e-41 ND / Lus10002162 [exp] 137 / 1e-39 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005609 pacid=23158757 polypeptide=Lus10005609 locus=Lus10005609.g ID=Lus10005609.BGIv1.0 annot-version=v1.0 ATGCAGGGTTATAGTTGGAATGGAGAGTGGCAAGGTCCATATGGTGCAAGTAATGAGGATGAAGGTTGGAGCTCATATCCTAACCAACACCAACATTATG AGCATCAAGGCCCACCAAACTACTACCAACCTAGCTATGGAGGAGAACAACAACAATGGAGTGACTTTGGGCAAGGAGCAATGCCAAGTTGGGCTGCACA TCAATCTCTACCACCTTTCTACCCAGACTCATCTTCAACTTACTATCACCAAGACTCACCTTCAACCTACTTCCACCAAGACTACAATCAAGATCATCCA CCTTTTCAAGATCAATGCTCAAGACCTGATTATTCCAATCAATCCTCTCCTTCCATGCATGAGCAACTCCTTATGCTACTTGAGTACCTATGTGAGGAAC CTCACAAGGAGTACTTCCCACATCAGTCTAGAATGGACTTTTCCATCTCGGGACCATCCTTAGACAACCTCATCGACCACGCGAGTACCACCATTAGCTT GGGGAGCATTGTAGAGCTTGATGTTCACTCACCAACCTACCTCTACCCTCTTCAAGCGTACACATCCACAAGGAGGAAGCCACAACAAGGAAAGAGGTGG CGCGCACAACTGCTTTGGCTCCCCCATCTTTCTCTAAGGGTGCTACTTGGCATTCAACTCCAATCCTTGAAGAAGCTAATGGAATTCAAGGAGGTTCTAA GTTGGGGAGCGTAA
AA sequence Show only first row Show all	>Lus10005609 pacid=23158757 polypeptide=Lus10005609 locus=Lus10005609.g ID=Lus10005609.BGIv1.0 annot-version=v1.0 MQGYSWNGEWQGPYGASNEDEGWSSYPNQHQHYEHQGPPNYYQPSYGGEQQQWSDFGQGAMPSWAAHQSLPPFYPDSSSTYYHQDSPSTYFHQDYNQDHP PFQDQCSRPDYSNQSSPSMHEQLLMLLEYLCEEPHKEYFPHQSRMDFSISGPSLDNLIDHASTTISLGSIVELDVHSPTYLYPLQAYTSTRRKPQQGKRW RAQLLWLPHLSLRVLLGIQLQSLKKLMEFKEVLSWGA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005609 [exp]	0	1
					Lus10024552 [exp]	1.4	0.9854
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10021707 [exp]	1.7	0.9641
AT5G13825			unknown protein		Lus10001690 [exp]	5.0	0.9104
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10002389 [exp]	5.8	0.9642
					Lus10003840 [exp]	10.0	0.9359
AT3G62950			Thioredoxin superfamily protei...		Lus10040898 [exp]	11.1	0.8177
					Lus10005396 [exp]	11.2	0.9359
					Lus10027664 [exp]	11.5	0.9265
					Lus10022573 [exp]	12.2	0.9359
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10031191 [exp]	12.9	0.7201

Compare expression of checked genes

Lus10005609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.