Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39330 393 / 2e-136 AtCAD1, ATCAD9 cinnamyl alcohol dehydrogenase 9 (.1.2) AT2G21730 382 / 7e-132 CAD2, ATCAD2 cinnamyl alcohol dehydrogenase homolog 2 (.1) AT2G21890 380 / 2e-131 CAD3, ATCAD3 cinnamyl alcohol dehydrogenase homolog 3 (.1) AT4G37980 355 / 9e-122 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT4G37970 353 / 1e-120 ATCAD6 cinnamyl alcohol dehydrogenase 6 (.1) AT4G37990 348 / 5e-119 CAD-B2, ATCAD8, ELI3-2 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) AT1G72680 301 / 1e-100 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) AT3G19450 294 / 1e-97 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G34230 279 / 8e-92 CAD-5, ATCAD5, CAD-D, CAD6 cinnamyl alcohol dehydrogenase 5 (.1.2) AT5G43940 65 / 2e-11 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017285 [exp] 669 / 0 AT4G39330 413 / 1e-144 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10002089 [exp] 383 / 1e-132 AT4G39330 577 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10035956 [exp] 376 / 9e-130 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10025706 [exp] 374 / 6e-129 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10023268 [exp] 360 / 8e-124 AT4G37980 471 / 1e-167 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Lus10003854 [exp] 324 / 3e-110 AT4G39330 486 / 2e-174 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10010149 [exp] 306 / 2e-102 AT1G72680 550 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Lus10002812 [exp] 305 / 7e-102 AT3G19450 523 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10000143 [exp] 302 / 7e-102 AT4G39330 463 / 3e-165 cinnamyl alcohol dehydrogenase 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018300 [exp] 557 / 0 AT4G39330 409 / 5e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.001G307200 [exp] 402 / 3e-140 AT4G39330 572 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.016G078300 [exp] 391 / 6e-136 AT4G37970 482 / 2e-171 cinnamyl alcohol dehydrogenase 6 (.1) Potri.016G065300 [exp] 377 / 3e-130 AT4G37990 492 / 1e-175 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.006G199100 [exp] 371 / 5e-128 AT4G37980 506 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.009G063400 [exp] 359 / 6e-123 AT4G37980 490 / 1e-174 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.001G268600 [exp] 358 / 8e-123 AT4G37980 480 / 7e-171 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.001G372400 [exp] 329 / 3e-111 AT4G39330 439 / 2e-154 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.006G024300 [exp] 311 / 2e-104 AT1G72680 521 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.011G148100 [exp] 305 / 6e-102 AT1G72680 571 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10005611 pacid=23157204 polypeptide=Lus10005611 locus=Lus10005611.g ID=Lus10005611.BGIv1.0 annot-version=v1.0 ATGGCTCAAACGACACCAAATCACACGCAGACAGTTAGCGGGTGGGCAGCTCAGGACACCTCCGGCAACATCTCTCCTTACACTTTCAAACGCCGTGAGA ACGGAGATACGGATGTAACGATAGACATACTCTACTGTGGAGTCTGCCACACTGATCTCCACCAGGCCAAGAACGATTGGGGCATCACCATGTACCCTAT TGTTCCTGGGCATGAGATAACGGGCATTATAAGGAAGGTAGGGAAGAAGGTGGAGGGTTTTAAGGTTGGAGACAGAGCTGGAATCGGGTGCCTAGCTGCT TCTTGTTTGGACTGTGAGTTTTGCCAGACCTCTCAGGAGAATTACTGCGACAAGCTTCAGTTCACTTACAATGGTGTTTTCTGGGACGGTAGCATTACTT ACGGTGGCTACTCCGATATGATCGTCTCCGATTACAGGTACGTGGTGCACGTGCCAGAGAGCCTCCCGATGGACGCAGCGGCGCCGCTGCTCTGCGCCGG GATCACCGTGTTCACGCCGTTGAAAGACCACAACTTGATTGAATCGCCAAGGAAGAAAATCGGGGTAGTTGGGCTGGGCGGTTTGGGGCATGTCGCCGTT AAATTCGGCAAGGCGTTCGGTCACCACGTCACCGTCATCAGCACATCTCCTTCCAAGGAGAAGGAGGCCAGGGAACGCTTGGGTGCGGACGACTTCATAG TCAGCACCAATCCCACTCACATGCAGGCCGGAAGGAGGACCCTGGACTTTATACTGAATACGGTGTCGGCTGAGCACTCATTGGGACCCATTTTGGAGTT GCTAAAAGTCAACGGGACGATGGTCATAGTTGGCGCTCCCGGAAATTCGCTTGAACTCCCGGCGTTTCCTCTTATATTCGGGAAAAGGACAGTGAAAGGT GGGATAATAGGAGGAATGAAGGAGACGCAAGAGATGATGGACTTGTGCGGGAAACACAACATAACCTGCGACATCGAGGTTGTGAAACCGGTCAACATTA ACAAAGCATTCCAACGCCTAGCAGCAAATGATGTCAAGTACCGCTTCGTCATTGATATCGCTGGATCAGGCTCCTCTCTCTAG
AA sequence Show only first row Show all	>Lus10005611 pacid=23157204 polypeptide=Lus10005611 locus=Lus10005611.g ID=Lus10005611.BGIv1.0 annot-version=v1.0 MAQTTPNHTQTVSGWAAQDTSGNISPYTFKRRENGDTDVTIDILYCGVCHTDLHQAKNDWGITMYPIVPGHEITGIIRKVGKKVEGFKVGDRAGIGCLAA SCLDCEFCQTSQENYCDKLQFTYNGVFWDGSITYGGYSDMIVSDYRYVVHVPESLPMDAAAPLLCAGITVFTPLKDHNLIESPRKKIGVVGLGGLGHVAV KFGKAFGHHVTVISTSPSKEKEARERLGADDFIVSTNPTHMQAGRRTLDFILNTVSAEHSLGPILELLKVNGTMVIVGAPGNSLELPAFPLIFGKRTVKG GIIGGMKETQEMMDLCGKHNITCDIEVVKPVNINKAFQRLAANDVKYRFVIDIAGSGSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10005611 [exp]	0	1
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10025727 [exp]	5.7	0.7868
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10031275 [exp]	8.1	0.7451
AT4G02715			unknown protein		Lus10022059 [exp]	9.5	0.6863
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10020705 [exp]	13.4	0.7710
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10010471 [exp]	13.6	0.7289
AT4G38690			PLC-like phosphodiesterases su...		Lus10034483 [exp]	15.6	0.7491
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10022083 [exp]	18.8	0.7430
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10004389 [exp]	19.3	0.7194
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10023674 [exp]	19.8	0.7541
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10008341 [exp]	24.0	0.7394

Compare expression of checked genes

Lus10005611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.