Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20180 254 / 2e-81 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT3G49070 114 / 5e-28 Protein of unknown function (DUF677) (.1) AT3G19330 74 / 3e-14 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) AT3G19250 71 / 3e-13 Protein of unknown function (DUF677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017286 [exp] 622 / 0 AT1G20180 265 / 1e-85 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10010144 [exp] 411 / 4e-142 AT1G20180 260 / 4e-83 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10017348 [exp] 390 / 5e-134 AT1G20180 255 / 4e-81 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10031977 [exp] 95 / 3e-21 AT3G19330 284 / 2e-93 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Lus10039258 [exp] 91 / 3e-21 AT3G49070 168 / 1e-50 Protein of unknown function (DUF677) (.1) Lus10035125 [exp] 73 / 9e-15 AT3G19330 183 / 1e-56 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Lus10028573 [exp] 60 / 3e-10 AT3G49070 102 / 4e-25 Protein of unknown function (DUF677) (.1) Lus10018879 [exp] 43 / 4e-05 AT3G49070 56 / 2e-10 Protein of unknown function (DUF677) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G243800 [exp] 302 / 6e-100 AT1G20180 252 / 2e-80 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.002G018200 [exp] 299 / 1e-98 AT1G20180 288 / 2e-94 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.005G193000 [exp] 157 / 3e-44 AT1G20180 155 / 8e-44 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.002G067300 [exp] 151 / 3e-42 AT1G20180 130 / 2e-34 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.015G147400 [exp] 108 / 2e-26 AT3G49070 253 / 1e-80 Protein of unknown function (DUF677) (.1) Potri.010G240200 [exp] 68 / 3e-12 AT3G19330 311 / 9e-104 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF05055 [flax] [poplar] DUF677 Protein of unknown function (DUF677)
Representative CDS sequence Show only first row Show all	>Lus10005612 pacid=23157197 polypeptide=Lus10005612 locus=Lus10005612.g ID=Lus10005612.BGIv1.0 annot-version=v1.0 ATGACAAAGCTTTCATGGTCCAAGATACAATCTTTCCTCCTCTTCCAAGGAGGGAGATCGCCGGTTGGGGGTTCAGGAGATGGTAGCTTGAGCAGCAAGC TAACCGTGAATGAGGAGTACAAGGAAGCATTTCGGACGGAGTCTTATGTGGAAATGTGGACGGAACTCCAATCCAAGTTAATTATTGACCACCGCTTCAT CTCTTCTTCTTCTTCTTCTTCATCATTGTCATCCTCTTCTTCTGCTTTCCCTTCCCACCTCTCCGATTATCTCTTCCGCCCACATCAAGAGCAAGAAACC ATCTCAAACCTCGTACAGAGATCCAACTGCGACCGCCTTTTAATCGATTACTTCGACTCCAGCTTGATCGCCTGCGACATCTGCGAGACATTGCTCCGCT CGGTCCATTCAAACCCTGCACACTACGCCAAACTAAAGAGGGTTATCAAGCTGGCCAACAAAAAGGCTGCCTCTACATCATCATCCATTTACAGAGACCT TGCCTCCTATGCTCTGCATACCAACCCTCTTTCCTCAGTCAGACCCTTCCAGTTCCAGGACATCCACGACAACAATTCCGGCTTGCTCCACGAATTGACT CGAAAAATGTGCAAGATCAGGCGTCGAGCTAAGCTGAAGAGGATCGCGAAGAAAGCTGGAGGATGTGGACTTGTGGTTGTCCATACTACGTTAATGGCCA CCCTTTTGGTGATTGCTATCCACAGCTTGGTTGGGATCATAGCGGCTCCGGCTGTGGTAGGTTGTTTCGGTTGCTTCAAGAAATCGAAGAGATCTTCCGT TCGTCCTGGAGGGAGGTCGACGGAGAATAAACTATGCAGTCAGCTCGACGTTGCTGCGAAGGGGTTATTCATATTGGTGAACGATTTCGACACGATGAGT CGGTTGGCGACGAGCTTGAGCAATGAGGTGGAGCACAGGAAGGTGCTTGCAGGGATGTGTGTGAGGAACAAGAATGGTGAGCTGTTGAAGCAAGTGGTGA GGGAGTTGCGTGCGTATGATGCTTGTTATTTGGAACAGCTTGAGGAGCTTGAGCAGCATGTCTACTTGTGCTTTCATACAATTAACAAATCCAGGAGGTT GTTAATGCAGGAGATGATGGAGGCTAACGGTTTAGTTCATGCTGACGGTCCAGAGAATAATTGA
AA sequence Show only first row Show all	>Lus10005612 pacid=23157197 polypeptide=Lus10005612 locus=Lus10005612.g ID=Lus10005612.BGIv1.0 annot-version=v1.0 MTKLSWSKIQSFLLFQGGRSPVGGSGDGSLSSKLTVNEEYKEAFRTESYVEMWTELQSKLIIDHRFISSSSSSSSLSSSSSAFPSHLSDYLFRPHQEQET ISNLVQRSNCDRLLIDYFDSSLIACDICETLLRSVHSNPAHYAKLKRVIKLANKKAASTSSSIYRDLASYALHTNPLSSVRPFQFQDIHDNNSGLLHELT RKMCKIRRRAKLKRIAKKAGGCGLVVVHTTLMATLLVIAIHSLVGIIAAPAVVGCFGCFKKSKRSSVRPGGRSTENKLCSQLDVAAKGLFILVNDFDTMS RLATSLSNEVEHRKVLAGMCVRNKNGELLKQVVRELRAYDACYLEQLEELEQHVYLCFHTINKSRRLLMQEMMEANGLVHADGPENN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20180			Protein of unknown function (D...		Lus10005612 [exp]	0	1
AT2G20920			Protein of unknown function (D...		Lus10025079 [exp]	3.5	0.8086
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10039037 [exp]	8.1	0.7829
AT1G02070			unknown protein		Lus10009267 [exp]	18.2	0.7758
AT4G16380			Heavy metal transport/detoxifi...		Lus10001913 [exp]	23.1	0.7181
AT5G04460			RING/U-box superfamily protein...		Lus10017455 [exp]	24.7	0.7230
AT5G61670			unknown protein		Lus10016713 [exp]	25.0	0.7485
AT2G34980		SETH1	phosphatidylinositolglycan syn...		Lus10024198 [exp]	27.5	0.7095
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10028605 [exp]	39.1	0.7053
AT5G04460			RING/U-box superfamily protein...		Lus10028827 [exp]	42.9	0.6800
AT1G18740			Protein of unknown function (D...		Lus10029782 [exp]	46.7	0.7053

Compare expression of checked genes

Lus10005612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.