Plant FIBer expression Database

Lus10005613 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G75980 274 / 3e-94 Single hybrid motif superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017287
[exp]
262 / 6e-91 AT1G75980 201 / 1e-66 Single hybrid motif superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G018100
[exp]
299 / 3e-104 AT1G75980 275 / 8e-95 Single hybrid motif superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10005613 pacid=23157232 polypeptide=Lus10005613 locus=Lus10005613.g ID=Lus10005613.BGIv1.0 annot-version=v1.0
ATGTACGACCACCAAGTCCTCGAATCTGAGGGCCCAGAAAAGCTGGGGAAACCAGAGTCGTTGTACGATGAAGACGAAGAAGATTTGCGTAAGCTGTTAG
TTCCTGACGTAAAAGATCTTCCACCAACTCCACCTTCCGCTGTCGAAACCAACTTCGTCTCTTATTTCGCGCCAGATTTTATGAAGCCTGGGAATGACCA
GTACGTTTATAGACATGCCAATGGTTTGTGTGTGATCGGTTTGGCGCCCAGTCACTTGGCATTAAAGGATGAAGGAGGGATCACCGCCGTTGATTTCAAC
GTCGGCAAGTCTGATAGGAGCAGTATGAAGGTCTCCGGAAAACGGAAGAAGAATGCTCAACATTTTGAATCAAATACAGCTCTATGTAAAGTGTGCACTA
AAGAGGATTCATATATTGTGAGGTGTTGTGTGAAGGGGTCATTATTGGAAGTGAATGACAGACTCATCAAAAACCCATCTTTGCTCACTTCATCGGCGGG
TAGAGAGGGTTATGTTGCGATTATGATGCCAAAGCCAGCAGATTGGCTAAAGGTCAAGACTTCATTGTTGAGCCGTGAAGAGTATGCAAAGTTAAGAGGA
GGGTGCTGA
AA sequence
>Lus10005613 pacid=23157232 polypeptide=Lus10005613 locus=Lus10005613.g ID=Lus10005613.BGIv1.0 annot-version=v1.0
MYDHQVLESEGPEKLGKPESLYDEDEEDLRKLLVPDVKDLPPTPPSAVETNFVSYFAPDFMKPGNDQYVYRHANGLCVIGLAPSHLALKDEGGITAVDFN
VGKSDRSSMKVSGKRKKNAQHFESNTALCKVCTKEDSYIVRCCVKGSLLEVNDRLIKNPSLLTSSAGREGYVAIMMPKPADWLKVKTSLLSREEYAKLRG
GC

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G75980 Single hybrid motif superfamil... Lus10005613
[exp]
0 1
AT3G56570 SET domain-containing protein ... Lus10026538
[exp]
1.7 0.7188
AT5G58030 Transport protein particle (TR... Lus10036292
[exp]
9.2 0.6967
AT1G36730 Translation initiation factor ... Lus10002283
[exp]
13.2 0.6173
AT5G35360 CAC2 acetyl Co-enzyme a carboxylase... Lus10028753
[exp]
20.3 0.6343
AT5G25050 Major facilitator superfamily ... Lus10026893
[exp]
26.7 0.6173
AT1G30580 GTP binding (.1) Lus10023261
[exp]
29.4 0.6086
AT5G24260 prolyl oligopeptidase family p... Lus10018107
[exp]
30.8 0.6015
AT1G18070 Translation elongation factor ... Lus10041996
[exp]
36.6 0.6074
AT3G23910 unknown protein Lus10016653
[exp]
40.5 0.5583
AT3G16110 ATPDI4, ATPDIL1... ARABIDOPSIS THALIANA PROTEIN D... Lus10025792
[exp]
44.0 0.5987

Lus10005613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.