Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42180 461 / 6e-165 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT5G51890 344 / 1e-118 Peroxidase superfamily protein (.1) AT4G33420 281 / 8e-94 Peroxidase superfamily protein (.1) AT1G05260 265 / 3e-87 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT2G18980 259 / 5e-85 Peroxidase superfamily protein (.1) AT4G11290 256 / 6e-84 Peroxidase superfamily protein (.1) AT3G21770 255 / 1e-83 Peroxidase superfamily protein (.1) AT4G30170 253 / 8e-83 Peroxidase family protein (.1) AT3G01190 252 / 1e-82 Peroxidase superfamily protein (.1) AT3G49960 252 / 3e-82 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017288 [exp] 645 / 0 AT5G42180 462 / 4e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10034547 [exp] 562 / 0 AT5G42180 471 / 7e-169 peroxidase 64, Peroxidase superfamily protein (.1) Lus10031664 [exp] 342 / 1e-117 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1) Lus10027405 [exp] 337 / 8e-116 AT5G51890 448 / 2e-159 Peroxidase superfamily protein (.1) Lus10029543 [exp] 278 / 2e-92 AT4G33420 479 / 1e-171 Peroxidase superfamily protein (.1) Lus10018374 [exp] 274 / 5e-91 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10001442 [exp] 265 / 2e-87 AT4G30170 475 / 7e-170 Peroxidase family protein (.1) Lus10005679 [exp] 264 / 5e-87 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1) Lus10007638 [exp] 262 / 2e-86 AT3G01190 407 / 4e-143 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018000 [exp] 475 / 2e-170 AT5G42180 483 / 1e-173 peroxidase 64, Peroxidase superfamily protein (.1) Potri.005G108900 [exp] 452 / 2e-161 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 289 / 9e-97 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 289 / 9e-97 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 289 / 9e-97 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 289 / 9e-97 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.018G136900 [exp] 286 / 8e-96 AT4G33420 451 / 1e-160 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 286 / 1e-95 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.T045500 [exp] 282 / 3e-94 AT4G33420 441 / 9e-157 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 282 / 3e-94 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10005614 pacid=23157199 polypeptide=Lus10005614 locus=Lus10005614.g ID=Lus10005614.BGIv1.0 annot-version=v1.0 ATGGCACGTCCCATTCTTCTAACCAGCTTCCTAATCACCTTCACAGTACTCTTTTTCTCATCTGCCCATTCACTCAGCCTCAACTACTACGACAAAACTT GTCCCAACCTCGACTCAATAGTTACCAATGCTGTCAAGAAAGCTATGTCAAATGACAGAACAGTCCCCGCTGCTTTGCTTCGTATGCACTTCCACGATTG TTTCATCAGGGGTTGTGATGGCTCAGTGTTGTTGAAGTCGACGAAAAACAACGTAGCTGAGAAAGATGGGCCGCCCAACATTTCACTGCATGCGTTTTAT GTGATTGACCATGCCAAAGAAGCAGTCGAGAAATCGTGCCCTGGAGTCGTGTCTTGTGCAGATATTCTTGCTTTGGCTGCTAAAGATGCTGTCGCTTTGT CTGGAGGTCCAAACTGGAAAGTACCAAAAGGAAGATTAGACGGACGAATATCAAAGGCAACAGAAACCAGACAACTACCAGCTCCAGTATTCAACATCTC ACAACTCCAGCAAAGCTTTTCTCAGAGAGGTCTTTCATTGGAAGACCTAGTAGCTCTTTCAGGAGGACACACACTAGGATTCGCTCATTGTTCGTCTTTC CAGAACAGGATCCACAAGTTTAGTCCTAACTTGGATGTTGACTCGACTTTGAACCCATCATTAGCCGCGAACCTGAAGAAAGTCTGCCCTGCAAAGAACA CGGCTAAGAATGCAGGTTCCACATTGGATCCCACAACGTTTGGGTTCGACAATGTTTACTACAAGATGTTGCTTAGCGGGAAGAGCATTTTCTCATCCGA CCAAGCTTTGCTCACCAATCCCAAGGCTAAGGCTCTGGTTTCGAAATTTGCAGCCTCCGATGCTGCATTTAAACAGGCATTTGTTCAGTCCATGATTAAG ATGAGTAGCTTAACTGGTGGCCAGGAGATTCGACGTGATTGTAAGTTTGTGAGGTAA
AA sequence Show only first row Show all	>Lus10005614 pacid=23157199 polypeptide=Lus10005614 locus=Lus10005614.g ID=Lus10005614.BGIv1.0 annot-version=v1.0 MARPILLTSFLITFTVLFFSSAHSLSLNYYDKTCPNLDSIVTNAVKKAMSNDRTVPAALLRMHFHDCFIRGCDGSVLLKSTKNNVAEKDGPPNISLHAFY VIDHAKEAVEKSCPGVVSCADILALAAKDAVALSGGPNWKVPKGRLDGRISKATETRQLPAPVFNISQLQQSFSQRGLSLEDLVALSGGHTLGFAHCSSF QNRIHKFSPNLDVDSTLNPSLAANLKKVCPAKNTAKNAGSTLDPTTFGFDNVYYKMLLSGKSIFSSDQALLTNPKAKALVSKFAASDAAFKQAFVQSMIK MSSLTGGQEIRRDCKFVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10005614 [exp]	0	1
AT4G23690			Disease resistance-responsive ...		Lus10017538 [exp]	1.0	0.8585
AT4G19420			Pectinacetylesterase family pr...		Lus10034767 [exp]	4.9	0.7934
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10043120 [exp]	8.7	0.7668
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10008522 [exp]	9.2	0.7210
AT1G72230			Cupredoxin superfamily protein...		Lus10020944 [exp]	9.8	0.7936
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10017288 [exp]	10.1	0.8117
AT5G54062			unknown protein		Lus10008821 [exp]	18.5	0.7489
AT2G40370		LAC5	laccase 5 (.1)		Lus10007532 [exp]	20.0	0.7666
AT1G68570			Major facilitator superfamily ...		Lus10017817 [exp]	23.3	0.5892
AT2G23945			Eukaryotic aspartyl protease f...		Lus10023451 [exp]	25.3	0.7446

Compare expression of checked genes

Lus10005614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.