Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76010 207 / 2e-65 Alba DNA/RNA-binding protein (.1) AT1G20220 184 / 2e-56 Alba DNA/RNA-binding protein (.1) AT3G07030 141 / 4e-39 Alba DNA/RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017255 [exp] 327 / 3e-113 AT1G76010 251 / 2e-82 Alba DNA/RNA-binding protein (.1) Lus10034549 [exp] 246 / 2e-80 AT1G76010 276 / 5e-91 Alba DNA/RNA-binding protein (.1) Lus10021844 [exp] 245 / 6e-80 AT1G76010 280 / 1e-92 Alba DNA/RNA-binding protein (.1) Lus10022807 [exp] 136 / 2e-37 AT3G07030 241 / 4e-76 Alba DNA/RNA-binding protein (.1) Lus10011874 [exp] 135 / 3e-36 AT3G07030 239 / 2e-73 Alba DNA/RNA-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G017600 [exp] 258 / 8e-86 AT1G76010 216 / 3e-68 Alba DNA/RNA-binding protein (.1) Potri.005G244300 [exp] 234 / 8e-77 AT1G76010 221 / 7e-71 Alba DNA/RNA-binding protein (.1) Potri.002G066100 [exp] 184 / 6e-57 AT1G20220 200 / 1e-62 Alba DNA/RNA-binding protein (.1) Potri.005G194600 [exp] 180 / 1e-55 AT1G20220 194 / 6e-61 Alba DNA/RNA-binding protein (.1) Potri.002G240601 [exp] 128 / 3e-35 AT3G07030 199 / 3e-61 Alba DNA/RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0441 [flax] [poplar] AlbA PF01918 [flax] [poplar] Alba Alba
Representative CDS sequence Show only first row Show all	>Lus10005615 pacid=23157202 polypeptide=Lus10005615 locus=Lus10005615.g ID=Lus10005615.BGIv1.0 annot-version=v1.0 ATGGATCGCTACCAAAGAGTTGAGAAGCCAAGAGCTGAGACTCCCATCGCTGAGAATGAGATTCGAATTACTAGTCAGGGAAGGATGCGCAGTTATATCT CGTACGCCATGAGCCTGCTTCAAGACAAAGGTGCAAATGAAATTGTATTCAAGGCAATGGGAAGAGCCATCAACAAGACTGTGACAATAGTCGAGCTTAT CAAGAGAAGGATTGTTGGTCTTCATCAAATCACGTCAATTGGGTCTACTGATATAACAGATACATGGGAACCCCTTGAGGAAGGCCTCCTTCCTTTGGAG ACTACAAGGCATGTGTCCATGATTACGATTACACTTTCCAAAGTGGAATTGAATACATCATCTGTCGGGTATCAACCTCCATTGCCTGAAGACCAGGTGA AAGCCTCTAACGATTATGAATATGACGGAGAGGGATCTCCAAATGCCCGAGGCAGAGGTCGAGGTGGTAGAGGAAGGTCAAGGGGCCGAGGGAATGGGTA TGTGTCTGTTGAGCATGAAGATGGAGGGTACGATCGACCCCACTATGGCAGGGGTAGGGGCCGAGGCAGAGGACGCGGTGGTTTCCGTGGCCGAGGGAGG GGAGATTATAATGTTGCTCACACTGAGTTGCAGCAAGATGGCAGCTACAATAACGAAGCTCCTCCACAAGACCGTTATGAATCTCCTCCACAAGGCCGTT ATGAATCTCCACCACAAGGCCGTGGCAAGTCCCGGCGTGGCCGTGGGAGAGGAGGATATCGTGGACACGGCCGCGGAGGTAGATCAAATGGTGGATCACA AATCCAAGCAGCAGCAGCAGAATGA
AA sequence Show only first row Show all	>Lus10005615 pacid=23157202 polypeptide=Lus10005615 locus=Lus10005615.g ID=Lus10005615.BGIv1.0 annot-version=v1.0 MDRYQRVEKPRAETPIAENEIRITSQGRMRSYISYAMSLLQDKGANEIVFKAMGRAINKTVTIVELIKRRIVGLHQITSIGSTDITDTWEPLEEGLLPLE TTRHVSMITITLSKVELNTSSVGYQPPLPEDQVKASNDYEYDGEGSPNARGRGRGGRGRSRGRGNGYVSVEHEDGGYDRPHYGRGRGRGRGRGGFRGRGR GDYNVAHTELQQDGSYNNEAPPQDRYESPPQGRYESPPQGRGKSRRGRGRGGYRGHGRGGRSNGGSQIQAAAAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10005615 [exp]	0	1
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10000421 [exp]	3.0	0.9263
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002901 [exp]	4.9	0.9082
AT3G54490		RPB5E	"RNA polymerase II fifth large...		Lus10024169 [exp]	7.6	0.8710
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10039931 [exp]	8.5	0.8968
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10014035 [exp]	9.5	0.9191
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10006314 [exp]	12.6	0.8949
AT2G40660			Nucleic acid-binding, OB-fold-...		Lus10029026 [exp]	13.8	0.9023
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010986 [exp]	14.1	0.8761
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10027260 [exp]	15.2	0.9067
AT5G40080			Mitochondrial ribosomal protei...		Lus10011032 [exp]	16.1	0.8899

Compare expression of checked genes

Lus10005615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.