Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20225 233 / 2e-77 Thioredoxin superfamily protein (.1) AT1G76020 232 / 3e-77 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017254 [exp] 400 / 1e-143 AT1G20225 246 / 1e-82 Thioredoxin superfamily protein (.1) Lus10021843 [exp] 271 / 1e-92 AT1G20225 238 / 1e-79 Thioredoxin superfamily protein (.1) Lus10034550 [exp] 69 / 2e-15 AT1G76020 57 / 3e-11 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G244400 [exp] 295 / 6e-102 AT1G20225 259 / 1e-87 Thioredoxin superfamily protein (.1) Potri.002G017500 [exp] 258 / 1e-87 AT1G20225 251 / 6e-85 Thioredoxin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005616 pacid=23157193 polypeptide=Lus10005616 locus=Lus10005616.g ID=Lus10005616.BGIv1.0 annot-version=v1.0 ATGCAGAAGCTACAGATTATACCTCTCGCGTTCCTCTGTTTGATCCTCTTGACTGTTCGATCCCAGAATTTGCCCCCAGCAAAGTACGATGGGTTTCTCT ACACTTGCGGCCGGGCCGACCCGGACGCCGTTCTGATCGAGGCCTTCTTCGACCCGGTTTGCCCCGATAGCAGAGACGCGTGGCCTCCTCTCAAGCAAGC TCTCGACCGCTACGGCTCTCGCGTCTCCTTGATCCTCCATCTTCTCCCTTTACCTTATCATGACAATTCGTATGTGGCTTCTCGAGCTCTACACATTGCG AATTCATTGAACGCTTCCTCTACCTTTCCCTTACTGGAGCGATTCTTTCGACATCAGGAGAAGTTCTATAACAGTCGGACCGTGAACGTGACAAAAGCTG CTGTTGTTGAAGAGGTGGTTGATTTCGCAGCTGTAGCAGTTGGAAATTCTCTGATCTCTGAGTTTGAAGCTGGCTTCACCGACAGTAGAACCGATCTCAA GACACGGGTGTCCTTCAAGTTTAGTACGTCAAGAGGCATCTACGGCACTCCGTCTTTCCTTGTAAATGGGTTTGTCTTGCCTGACATTGGCTCACCCCTT GATTTCAATGGCTGGAAAAACATCATCGACCCATTGGTTGGCACAAACAAGGACGACCACTTTGATTTCATGGGCATCTTTTGA
AA sequence Show only first row Show all	>Lus10005616 pacid=23157193 polypeptide=Lus10005616 locus=Lus10005616.g ID=Lus10005616.BGIv1.0 annot-version=v1.0 MQKLQIIPLAFLCLILLTVRSQNLPPAKYDGFLYTCGRADPDAVLIEAFFDPVCPDSRDAWPPLKQALDRYGSRVSLILHLLPLPYHDNSYVASRALHIA NSLNASSTFPLLERFFRHQEKFYNSRTVNVTKAAVVEEVVDFAAVAVGNSLISEFEAGFTDSRTDLKTRVSFKFSTSRGIYGTPSFLVNGFVLPDIGSPL DFNGWKNIIDPLVGTNKDDHFDFMGIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20225			Thioredoxin superfamily protei...		Lus10005616 [exp]	0	1
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10023188 [exp]	2.8	0.8637
AT3G20300			Protein of unknown function (D...		Lus10033919 [exp]	3.0	0.8194
AT1G70250			receptor serine/threonine kina...		Lus10025553 [exp]	5.3	0.8366
AT5G53420			CCT motif family protein (.1.2...		Lus10005008 [exp]	5.7	0.8067
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10002228 [exp]	6.0	0.8687
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10042805 [exp]	6.9	0.7826
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Lus10009706 [exp]	12.1	0.8214
AT1G67570			Protein of unknown function (D...		Lus10011371 [exp]	14.6	0.7783
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10011338 [exp]	15.0	0.7867
AT4G25720		ATQC, QCT	GLUTAMINYL CYCLOTRANSFERASE, A...		Lus10014963 [exp]	15.4	0.7464

Compare expression of checked genes

Lus10005616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.