Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60420 289 / 3e-92 DC1 domain-containing protein (.1) AT4G31240 256 / 7e-82 protein kinase C-like zinc finger protein (.1.2) AT2G37780 44 / 0.0002 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017252 [exp] 686 / 0 AT1G60420 311 / 1e-100 DC1 domain-containing protein (.1) Lus10013017 [exp] 269 / 1e-84 AT1G60420 624 / 0.0 DC1 domain-containing protein (.1) Lus10029148 [exp] 62 / 1e-11 AT1G60420 121 / 5e-33 DC1 domain-containing protein (.1) Lus10000548 [exp] 49 / 6e-06 AT3G01680 677 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022305 [exp] 49 / 6e-06 AT3G01680 744 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10034567 [exp] 48 / 1e-05 AT3G01680 590 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10021828 [exp] 47 / 2e-05 AT3G01680 592 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10032103 [exp] 42 / 0.0008 AT3G01680 757 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G244700 [exp] 541 / 0 AT1G60420 298 / 8e-96 DC1 domain-containing protein (.1) Potri.002G017200 [exp] 536 / 0 AT1G60420 303 / 3e-97 DC1 domain-containing protein (.1) Potri.010G060200 [exp] 271 / 1e-85 AT1G60420 679 / 0.0 DC1 domain-containing protein (.1) Potri.010G059700 [exp] 268 / 3e-84 AT1G60420 680 / 0.0 DC1 domain-containing protein (.1) Potri.010G059600 [exp] 267 / 7e-84 AT1G60420 666 / 0.0 DC1 domain-containing protein (.1) Potri.010G059401 [exp] 265 / 2e-83 AT1G60420 667 / 0.0 DC1 domain-containing protein (.1) Potri.010G059550 [exp] 264 / 7e-83 AT1G60420 658 / 0.0 DC1 domain-containing protein (.1) Potri.010G059900 [exp] 264 / 9e-83 AT1G60420 652 / 0.0 DC1 domain-containing protein (.1) Potri.006G279400 [exp] 254 / 6e-81 AT4G31240 542 / 0.0 protein kinase C-like zinc finger protein (.1.2) Potri.010G060300 [exp] 256 / 9e-81 AT1G60420 560 / 0.0 DC1 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00578 [flax] [poplar] AhpC-TSA AhpC/TSA family
Representative CDS sequence Show only first row Show all	>Lus10005618 pacid=23157226 polypeptide=Lus10005618 locus=Lus10005618.g ID=Lus10005618.BGIv1.0 annot-version=v1.0 ATGTGTTGGCAGAATGACATTTGGTGGCCCAGATTTGCACTATCTAATCACAACACGTACACAACACCTTTGACATTGAATTTATTTGCGTGGCAGGTGA AAATTTCCGATCTAGAAGGGAAAGTAGTAGGGCTATACTTCTCAGCCAACTGGTACCCACCCTGTCGAAACTTCAACCAATTCCTCATTGGCGCCTACCA ACACCTCAAGGCCAATAACGGGTCGAATTTCGAGATCGTGTTCGTTTCCTGCGACGAGGACTCGGACGCGTTCGACAGCTACCATGCCGGAATGCCCTGG CTCAGCATCCCGTTCTCCGATTTAGAGGCCAAGAAATCCCTGACTTCGAAATTCGAGATCGAGGGGATTCCTTGCTTGGTTATCCTCCAGCCCGGCAATA CTACTGAGGGCAAAGATGTCGAGTCGGGAATACGAAACGGGGTTGAGTTAATGTACCGGTTCGGGGTGAATGCGTTTCCGTTCACGAAACTGAGGCTGGA GGAGCTGCAGAGGGAGGAGAAGGAGAAGCATGATAGCCAGACGCTTGTTAATTTGCTAACTAATCACGACAGAGACTATGTTTTGGGCCACCCCGCACCT AAGCAGGTGTCGGTTGGATCCCTAGTAGGAAAAACAATCGGACTCTACTTTTCGGCACAATGGTGTCTGCCTTGCGAGAAGTTCACTCCCAAGCTCATCG CAATCTACCACAAAATTAAGCAATCCCTAACCACGATCAGCAACGACGACTTCGAGATTGTGTTTGTGTCCAACGATCGGGACCAGAACGGGTTCGAGTC CTACTTTGCCCAAATGCCGTGGCTGGCACTACCATTTGGGGACCCGAACATCAAGGCGCTTGCCAAGCACTTTGATGTGCAGGGGATCCCTTGTTTGGTA ATACTGGGGCCTGATGGTAAGACCATTACAACTAACGGTAGGAGCCTGATAAACCTGTACCAAGACAGTGCATTTCCGTTTACAGAGTCGAAAGTTGAAT GGTTGGAGAGACAGATGGACGAGGAGGCGAAGAGTCTTCCGAAGACAAAGCAGCACGAGGGACATAGGCACGAGTTGACATTGGTGTCTCAGGAGACAGG AGGGGGACCATTCATATGCTGTAATTGTGAAGAGCAAGGGCTAGGCTGGGCTTACCAGTGTTTGGATTGTGGCTATGAGTTGCATCCCAAGTGTGTTCGA CCCACTGGCTCCGTCGCCAGCGTTAGTTAA
AA sequence Show only first row Show all	>Lus10005618 pacid=23157226 polypeptide=Lus10005618 locus=Lus10005618.g ID=Lus10005618.BGIv1.0 annot-version=v1.0 MCWQNDIWWPRFALSNHNTYTTPLTLNLFAWQVKISDLEGKVVGLYFSANWYPPCRNFNQFLIGAYQHLKANNGSNFEIVFVSCDEDSDAFDSYHAGMPW LSIPFSDLEAKKSLTSKFEIEGIPCLVILQPGNTTEGKDVESGIRNGVELMYRFGVNAFPFTKLRLEELQREEKEKHDSQTLVNLLTNHDRDYVLGHPAP KQVSVGSLVGKTIGLYFSAQWCLPCEKFTPKLIAIYHKIKQSLTTISNDDFEIVFVSNDRDQNGFESYFAQMPWLALPFGDPNIKALAKHFDVQGIPCLV ILGPDGKTITTNGRSLINLYQDSAFPFTESKVEWLERQMDEEAKSLPKTKQHEGHRHELTLVSQETGGGPFICCNCEEQGLGWAYQCLDCGYELHPKCVR PTGSVASVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60420			DC1 domain-containing protein ...		Lus10005618 [exp]	0	1
AT3G22750			Protein kinase superfamily pro...		Lus10022076 [exp]	3.9	0.8828
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10007976 [exp]	4.5	0.8919
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10036873 [exp]	5.5	0.8862
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10006224 [exp]	6.3	0.8837
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10003399 [exp]	9.3	0.8878
AT4G15248	CO		B-box type zinc finger family ...		Lus10039694 [exp]	21.5	0.8754
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10023705 [exp]	25.1	0.8302
AT5G67020			unknown protein		Lus10019344 [exp]	25.7	0.8698
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10028824 [exp]	26.5	0.8113
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10040428 [exp]	26.7	0.8645

Compare expression of checked genes

Lus10005618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.