Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76040 728 / 0 CPK29 calcium-dependent protein kinase 29 (.1.2) AT1G50700 688 / 0 CPK33 calcium-dependent protein kinase 33 (.1) AT3G20410 678 / 0 CPK9 calmodulin-domain protein kinase 9 (.1) AT4G21940 671 / 0 CPK15 calcium-dependent protein kinase 15 (.1.2) AT4G04720 669 / 0 CPK21 calcium-dependent protein kinase 21 (.1) AT1G61950 644 / 0 CPK19 calcium-dependent protein kinase 19 (.1) AT5G12180 608 / 0 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 607 / 0 CPK34 calcium-dependent protein kinase 34 (.1) AT4G23650 599 / 0 CDPK6, CPK3 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) AT4G04740 578 / 0 CPK23, ATCPK23 calcium-dependent protein kinase 23 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017251 [exp] 861 / 0 AT1G76040 807 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10021531 [exp] 701 / 0 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10040071 [exp] 699 / 0 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10032640 [exp] 670 / 0 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10006777 [exp] 648 / 0 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10017250 [exp] 644 / 0 AT1G76050 531 / 0.0 Pseudouridine synthase family protein (.1.2) Lus10020046 [exp] 644 / 0 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10038460 [exp] 612 / 0 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10017537 [exp] 612 / 0 AT4G23650 803 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G017000 [exp] 766 / 0 AT1G76040 758 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.005G245000 [exp] 750 / 0 AT1G76040 729 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.004G015500 [exp] 689 / 0 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.011G003400 [exp] 686 / 0 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.009G069200 [exp] 611 / 0 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.001G097400 [exp] 607 / 0 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.003G134000 [exp] 606 / 0 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.001G274700 [exp] 601 / 0 AT5G12180 909 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.004G207300 [exp] 566 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.009G168600 [exp] 558 / 0 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand CL0649 [flax] [poplar] PseudoU_synth PF00849 [flax] [poplar] PseudoU_synth_2 RNA pseudouridylate synthase
Representative CDS sequence Show only first row Show all	>Lus10005619 pacid=23157212 polypeptide=Lus10005619 locus=Lus10005619.g ID=Lus10005619.BGIv1.0 annot-version=v1.0 ATGGGACTCTGTTTCACAAGAACCAAGTCCCATGACATCCCAATCTCCTCTTCTAATTCATCAGACTCTCCTCCTCCCACCATCCACAAACCAAAACCAA ACCCAACCCAAAACTCATATTACCCATCATCATCGTCCCAACCAATTCCACCCAGAAATCCATCTTCCTCCATACCTTCCCAAATTGGCCCCATCCTGGG AAAGCCATACGTCGACGTTTCATCCATCTACGACCTCGCCAAGGAGCTCGGCAGGGGACAGTTCGGAATAACCTATTTGTGTACGGAGAAGTCCACGGGA AGGAACTACGCCTGCAAATCGATATCGAGGAGGAAGCTGGTGACCAAGAAGGACATTGAAGATGTGAGGAGAGAGATCCTGATATTGCAGCACTTAACGG GGCAACCCAATATCGTGGAATTCAAAGGTGCTTACGAAGACAAGGATAATCTGCACCTGGTTATGGAGGTGTGCTCTGGCGGGGAGCTGTTTGATCGGAT AATAGCTAAGGGGAGTTACTCGGAGAAAGAGGCTGCTAAGGTTATTAGGCAGATAGTGAATGTGGTGCACGTTTGCCATTTCATGGGCGTGATGCATAGA GATTTGAAGCCTGAGAATTTCTTGCTCGCTAGTAAAGATGACGAGGCTCCTATCAAGGCTACTGATTTCGGGCTCTCTGTTTTCATTGAAGAAGGGAAAG TATACAAAGAGCTGGTTGGGAGTGCATACTATGTTGCGCCGGAGGTGTTGAAAAGAAGCTATGGAAAGGAGATAGATGTGTGGAGTGCTGGAGTTATCTT GTACATTCTCCTATCCGGCGTTCCTCCATTTTGGGCTGAGACTGAAAGAGGAATATTCAATGCGATTTTAGAGACAAATCTTGATCTGCAGACCTCACCA TGGCCAAATATTTCAGACTCTGCTAAGGATCTAGTCAGGAAGATGTTAGCAAGAGACCCTAGGAAAAGGATAACTGCTGCACAGGCACTTGAACATTCAT GGTTGAAAGAAGGCGGAAATGCGTCTGATAAACCAATTGACAGTGCGGTATTCATAAGGATGAAGCAGCTTAGAGCTATGAACAAGATGAAGAAACTTGC TTTGAAGGTAATAGCAGAGAACCTTCCAGAGGAAGAAATCAAGGGGTTGAAACAGATGTTCAAGAACATGGACACTGATGGAAGTGGAACAATTACTTAT GACGAACTCAAAGCTGGTTTGCACAGGCTAGGTTCTAAGCTCTCTGAAGCTGAGATCAGGCAGTTGATGGATGCGGCTGATGTAGACAAGAATGGGACGA TAGATTACGTTGAGTTCATAACAGCAACAATGCACAGGCATAGGCTTGAGAAGGAAGAGCACTTGTTCCAAGCTTTCCAGTACTTTGATAAGGACAACAG TGGGTTTATCACAAGAGATGAGTTGAGACATGCCATGTCTCAGTATGGCATGGGCGATGAAGCAACCATCGATGAGGTCATAGACGATGTCGATACCGAT AAGAAGATAGAACTAGCGTACTCTAGTAGTGCGATGTTCGTTTCCCCGCGTTCTGCTGTTCTCCAATCCTCCTCGCCATTTCTCTCTTTCACCTTCAACC GGAACCCAAGGCGATCAACTTCCCATATTCTCTTCAGATTTCTCTCCGTTCGTTGTTCTCCGTCTTCCACCGCCAGTGTCGGGGGGGGGGGGAAAGCATT GCGGGACTTAACCGTGAGCAATTACGCCGGTGTCAGACTGGAGGAGACTGTAGAGACTGTTTCCGGCAAGCTGAGGCTCGATTCTTGGATTTCTTCTCGG ATTTCAGGCATCAGTAGAGCTCGCGTTCAGTCAAGTATCAAAACAGGTCTCGTCATCGTCAATGGCAGAGTCGTCGATATGGTTTACCGGAAAACAGCTC AGCCGGAAAACATACCTCTAGATATAGTTTACGAAGATGACCACGTTCTGGTTGTTCATCCAGCACCTGGAAATCCTGCAGGAACACTTGTAAATGGCAT TCTTCACCATTGCAGTCTTCCAGGACTTGCGTCTTCTAGTCATGAAATTATCACAGATCCAGAGGATGTTTCAGATGATGAAGATTTAGTTTCTAGCTCT TATGCTGCGTCAGTTCGTCCAGGAATAGTGCACAGATTGGATAAAGGCACTAGTGGATTGCTTATAGTTGGTAAGGATGAGCATTCGCATGCTCACTTGT CTGAACAATTCAAACAACGCACCATCCGAAGGGTGTATTTAAGTCTTACTTCTGGCGTCCCTTCACCGGTTGCTGGACGCATAGACATCCCCATTGGCCG TGATATCCATAACAGGGTTCGTATGACTGCTGTAACTGGACCAATGGCCAGAGGGAAATCCCGTCTTGCTGCTAGTAGGTACAAGGTCATTGAAACTCTT GCTGGTGGTGGTTCGGCTTTGGTTGAATGGAAACTAGAAACTGGGCGTACTCACCAGATTCGTGCACATGCAAAGTATATTGGATGTCCGTTGCTCGGGG ATGAGGTCTATGGAGGGACCAAAAACATGGCTTTGTCCCTGCTTCAACCTAGAGTAGCTCAAAGCTATCACGATCAACTCTTGGAATTGCTTTCGGGATT CTATAGACCTTGTTTGCATGCTTTCTCTTTGGGGTTTGAGCATCCTTGCACAAAGAAAGAAATACACTTCTCATGCCCTCCTCCTCCTGATTTCGATAAG ATCCTAAGGCAGCTCCGTGCAATGACTACAGAGAAGCTCCCTCCTTTCCCCCACTGTGTTTTATGGCCTTGCTTGCATCTGACGTTCAGTTGTTCACCAT GCAGCCACTTCAGCACTATTCCTGAATAA
AA sequence Show only first row Show all	>Lus10005619 pacid=23157212 polypeptide=Lus10005619 locus=Lus10005619.g ID=Lus10005619.BGIv1.0 annot-version=v1.0 MGLCFTRTKSHDIPISSSNSSDSPPPTIHKPKPNPTQNSYYPSSSSQPIPPRNPSSSIPSQIGPILGKPYVDVSSIYDLAKELGRGQFGITYLCTEKSTG RNYACKSISRRKLVTKKDIEDVRREILILQHLTGQPNIVEFKGAYEDKDNLHLVMEVCSGGELFDRIIAKGSYSEKEAAKVIRQIVNVVHVCHFMGVMHR DLKPENFLLASKDDEAPIKATDFGLSVFIEEGKVYKELVGSAYYVAPEVLKRSYGKEIDVWSAGVILYILLSGVPPFWAETERGIFNAILETNLDLQTSP WPNISDSAKDLVRKMLARDPRKRITAAQALEHSWLKEGGNASDKPIDSAVFIRMKQLRAMNKMKKLALKVIAENLPEEEIKGLKQMFKNMDTDGSGTITY DELKAGLHRLGSKLSEAEIRQLMDAADVDKNGTIDYVEFITATMHRHRLEKEEHLFQAFQYFDKDNSGFITRDELRHAMSQYGMGDEATIDEVIDDVDTD KKIELAYSSSAMFVSPRSAVLQSSSPFLSFTFNRNPRRSTSHILFRFLSVRCSPSSTASVGGGGKALRDLTVSNYAGVRLEETVETVSGKLRLDSWISSR ISGISRARVQSSIKTGLVIVNGRVVDMVYRKTAQPENIPLDIVYEDDHVLVVHPAPGNPAGTLVNGILHHCSLPGLASSSHEIITDPEDVSDDEDLVSSS YAASVRPGIVHRLDKGTSGLLIVGKDEHSHAHLSEQFKQRTIRRVYLSLTSGVPSPVAGRIDIPIGRDIHNRVRMTAVTGPMARGKSRLAASRYKVIETL AGGGSALVEWKLETGRTHQIRAHAKYIGCPLLGDEVYGGTKNMALSLLQPRVAQSYHDQLLELLSGFYRPCLHAFSLGFEHPCTKKEIHFSCPPPPDFDK ILRQLRAMTTEKLPPFPHCVLWPCLHLTFSCSPCSHFSTIPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76040		CPK29	calcium-dependent protein kina...		Lus10005619 [exp]	0	1
AT1G11570		NTL	NTF2-like (.1.2)		Lus10020061 [exp]	2.8	0.9061
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10034962 [exp]	4.5	0.8804
AT1G34420			leucine-rich repeat transmembr...		Lus10009429 [exp]	6.0	0.8104
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10022636 [exp]	9.2	0.8751
AT1G31720			Protein of unknown function (D...		Lus10037256 [exp]	9.8	0.8356
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004926 [exp]	10.6	0.8609
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10019944 [exp]	10.9	0.8551
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10012984 [exp]	15.7	0.8595
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10009884 [exp]	15.9	0.8591
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10006462 [exp]	16.9	0.8354

Compare expression of checked genes

Lus10005619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.