Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20270 414 / 8e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G66060 355 / 3e-123 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G17720 334 / 5e-115 P4H5 prolyl 4-hydroxylase 5, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G35810 320 / 1e-109 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G28480 217 / 8e-69 Oxoglutarate/iron-dependent oxygenase (.1.2) AT5G18900 212 / 3e-67 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G06300 210 / 4e-66 P4H2, AT-P4H-2 prolyl 4-hydroxylase 2, P4H isoform 2 (.1) AT3G28490 209 / 6e-66 Oxoglutarate/iron-dependent oxygenase (.1) AT4G35820 200 / 1e-62 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G43080 195 / 1e-60 AT-P4H-1 P4H isoform 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017249 [exp] 567 / 0 AT1G20270 455 / 3e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10028404 [exp] 361 / 1e-125 AT5G66060 486 / 8e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10041857 [exp] 360 / 5e-125 AT5G66060 488 / 2e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10032183 [exp] 230 / 6e-74 AT3G28480 434 / 3e-154 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10012014 [exp] 216 / 1e-68 AT5G18900 448 / 2e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016271 [exp] 215 / 3e-68 AT5G18900 444 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014502 [exp] 210 / 3e-66 AT3G28480 398 / 4e-140 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10031048 [exp] 194 / 1e-60 AT2G43080 406 / 7e-145 P4H isoform 1 (.1) Lus10035434 [exp] 163 / 2e-46 AT2G43080 365 / 4e-125 P4H isoform 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G245300 [exp] 436 / 2e-155 AT1G20270 483 / 3e-174 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G108000 [exp] 347 / 5e-120 AT5G66060 405 / 1e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.007G060800 [exp] 333 / 3e-114 AT5G66060 349 / 6e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.017G075100 [exp] 221 / 2e-70 AT3G28480 436 / 3e-155 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.017G075300 [exp] 217 / 2e-69 AT3G28480 345 / 5e-120 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.008G197700 [exp] 215 / 3e-68 AT5G18900 448 / 3e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G016700 [exp] 207 / 2e-66 AT1G20270 229 / 5e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G232100 [exp] 200 / 1e-62 AT2G43080 456 / 4e-164 P4H isoform 1 (.1) Potri.009G091000 [exp] 155 / 6e-45 AT4G33910 431 / 9e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G296800 [exp] 152 / 4e-44 AT4G33910 441 / 6e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10005620 pacid=23157207 polypeptide=Lus10005620 locus=Lus10005620.g ID=Lus10005620.BGIv1.0 annot-version=v1.0 ATGGCGAAACTGAGACACTCGCGATTGCACGCGAAGAAATGGTCGTCATTCACTCTGGTTCTCTCCATGCTGTTCATGCTCTCGGTTGTCATCCTGATGC TTCTAGGCTTGGGGATTTTCTCTCTTCCTATGAGCACTGACGATTCCACTCAAAACGATTTGTCTGCTTCCTATCGCCGCATGGCTATCGAACGAGATGG CCAAGGGCTAGGGCAGCGAGGAGAGCAGTGGACAGAGATTGTTTCGTGGGAGCCTAGAGCTTTTCTGTATCACAATTTCCTGCTGTTTCTGTTGTACATG TTAATTACTTGCGAGGCGAAAGTATTTTCATTTGTATTAACGATGCTAGTTGCTGGGCTCAAATCTGGACAGTCCAAAGAAGAATGCGAGTACCTAATCT CCCTTGCGAAGCCTCACATGACGAAATCAACTGTGGTGGACAGTACAACAGGGAAAAGCAAAGATAGCAGGGTGCGTACAAGCTCTGGCATGTTTCTCAG GAGAGGACAAGATAAAATCATCCGAAGCATTGAGAAGAGGATCGCAGATTTCTCTTTTATTCCTGCAGACCATGGTGAAGGACTTCAAATTCTCCACTAT GAGATTGGTCAGAAGTACGAGCCTCATTTTGATTATTTCCTTGATGAATTCAACACCAAGAATGGCGGCCAGCGAACAGCTACTTTGCTAATGTATTTGT CAGACGTGGAAGAAGGCGGCGAGACTGTATTCCCTAATGCCAAGGCGAATGCCAGTTCGGTACCATGGTGGAATGAGCTGTCCGAATGCGGTAAAAAGGG TCTTTCCCTGAAACCAAAGAGGGGGAATGCTTTGTTATTTTGGAGCACAAGACCAGATGCGTCGTTAGATCCAACTAGTTTACATGGTATTGGTAGTTGC GCCGTGATTACAGGGAACAAATGGTCAGCTACAAAATGGATGCATCTCGGAGAGTACAAAGTCAGCTAA
AA sequence Show only first row Show all	>Lus10005620 pacid=23157207 polypeptide=Lus10005620 locus=Lus10005620.g ID=Lus10005620.BGIv1.0 annot-version=v1.0 MAKLRHSRLHAKKWSSFTLVLSMLFMLSVVILMLLGLGIFSLPMSTDDSTQNDLSASYRRMAIERDGQGLGQRGEQWTEIVSWEPRAFLYHNFLLFLLYM LITCEAKVFSFVLTMLVAGLKSGQSKEECEYLISLAKPHMTKSTVVDSTTGKSKDSRVRTSSGMFLRRGQDKIIRSIEKRIADFSFIPADHGEGLQILHY EIGQKYEPHFDYFLDEFNTKNGGQRTATLLMYLSDVEEGGETVFPNAKANASSVPWWNELSECGKKGLSLKPKRGNALLFWSTRPDASLDPTSLHGIGSC AVITGNKWSATKWMHLGEYKVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Lus10005620 [exp]	0	1
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Lus10017249 [exp]	4.0	0.8925
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10035582 [exp]	4.9	0.8729
AT2G41640			Glycosyltransferase family 61 ...		Lus10035441 [exp]	6.9	0.8503
AT1G74940			Protein of unknown function (D...		Lus10027642 [exp]	7.1	0.8366
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020773 [exp]	8.7	0.8376
					Lus10039778 [exp]	11.2	0.8260
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10042787 [exp]	12.2	0.8153
AT4G10265			Wound-responsive family protei...		Lus10033731 [exp]	13.2	0.8347
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10005343 [exp]	15.0	0.7862
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10025252 [exp]	16.3	0.8338

Compare expression of checked genes

Lus10005620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.