Plant FIBer expression Database

Lus10005621 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G76060 164 / 2e-52 EMB1793 EMBRYO DEFECTIVE 1793, LYR family of Fe/S cluster biogenesis protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017248
[exp]
240 / 3e-82 AT1G76060 194 / 3e-64 EMBRYO DEFECTIVE 1793, LYR family of Fe/S cluster biogenesis protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G016600
[exp]
177 / 1e-57 AT1G76060 196 / 3e-65 EMBRYO DEFECTIVE 1793, LYR family of Fe/S cluster biogenesis protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0491 LYR-like PF05347 Complex1_LYR Complex 1 protein (LYR family)
Representative CDS sequence
>Lus10005621 pacid=23157208 polypeptide=Lus10005621 locus=Lus10005621.g ID=Lus10005621.BGIv1.0 annot-version=v1.0
ATGACGATGACAATCAAGCTCCAGAAATGGAAGAATCTAGCGATCTCGGTCAACCATACAGTACGGGGCAGCAGGGCTCTTAACCGGCGGCATATACACG
AAGGTCCGGACACCTTGGAGGAGTTGTTGGAGAGGCATGTGGCGAAGAACAAAGAGACTACGTCGTCGCTAGACGAAGAAGAGGAAGAGCTACTGAACCG
CAGAAGATTGACGAGCACGCGGCGAGAGGCGCTGCATCTGTACAGGGACATCTTGAGGGCGACGCGGTTCTTCGTGTGGCCAGACACTCGCGGGGTGATG
TGGAGGGACGTGCTGAGAGAGAACGCGAGGAAGGAGTTTGACGAAGCTCGGTTCGAGAAGGATCCGGAGATCGTGACGCAGCTTCTCATAAATGGCCGAG
ACGCCGTGGAATCTGCTCTGGAGAAGCTCGCCGAGAAGCAGAGACTGCAGATTGAGAAAGAGCGCGGCGGAAATGGAGGATTCGGCTGCTGA
AA sequence
>Lus10005621 pacid=23157208 polypeptide=Lus10005621 locus=Lus10005621.g ID=Lus10005621.BGIv1.0 annot-version=v1.0
MTMTIKLQKWKNLAISVNHTVRGSRALNRRHIHEGPDTLEELLERHVAKNKETTSSLDEEEEELLNRRRLTSTRREALHLYRDILRATRFFVWPDTRGVM
WRDVLRENARKEFDEARFEKDPEIVTQLLINGRDAVESALEKLAEKQRLQIEKERGGNGGFGC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G76060 EMB1793 EMBRYO DEFECTIVE 1793, LYR fam... Lus10005621
[exp]
0 1
AT3G20890 RNA-binding (RRM/RBD/RNP motif... Lus10030139
[exp]
1.7 0.8776
AT2G35330 RING/U-box superfamily protein... Lus10000899
[exp]
2.6 0.8602
AT3G21740 APO4 ACCUMULATION OF PHOTOSYSTEM ON... Lus10039659
[exp]
2.8 0.8700
AT3G07090 PPPDE putative thiol peptidase... Lus10038168
[exp]
3.5 0.8793
AT2G35900 unknown protein Lus10021249
[exp]
4.2 0.8626
AT2G03690 coenzyme Q biosynthesis Coq4 f... Lus10026673
[exp]
4.5 0.8784
AT1G16210 unknown protein Lus10022649
[exp]
6.3 0.8655
AT2G36930 C2H2ZnF zinc finger (C2H2 type) family... Lus10023928
[exp]
6.5 0.8383
AT5G03370 acylphosphatase family (.1) Lus10026533
[exp]
6.6 0.8449
AT2G36780 UDP-Glycosyltransferase superf... Lus10023939
[exp]
7.7 0.8396

Lus10005621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.