Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76070 102 / 2e-25 unknown protein AT1G20310 85 / 2e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017246 [exp] 482 / 7e-170 AT5G50410 186 / 7e-55 unknown protein Lus10034552 [exp] 123 / 1e-33 AT1G76070 66 / 5e-13 unknown protein Lus10021840 [exp] 115 / 2e-32 AT1G76070 59 / 1e-11 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G016500 [exp] 119 / 6e-32 AT1G76070 116 / 4e-31 unknown protein Potri.005G245600 [exp] 109 / 5e-28 AT1G76070 97 / 1e-23 unknown protein Potri.005G107500 [exp] 45 / 1e-05 AT1G76070 57 / 1e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005623 pacid=23157201 polypeptide=Lus10005623 locus=Lus10005623.g ID=Lus10005623.BGIv1.0 annot-version=v1.0 ATGGAAAAGCTTCAACCCCCCGGCCATAAGTCGAAGAGCATCAGCAACGGCGGTCATCAGGTATTGAAGTTTCTCAAAGCAGCTTCTTCAATCAACTTCA ACAACCCTCCTTTCAGCCCCAGCCGAGATAATAAGCCTTCTTCGGATCATAAATTACATAACTACCCCCACCCCAGATCAGGATTCTCCGGCCCGCTTCT CCCCAGAGTCCCCCGTGCTGTTCGAGGTAAGTTCAAATCCGGCGACGCACAGCCGGAGGAGCCCACTTCTCCCACCATCTCTTGCATCGGCCAAATCAAG CACAAGAGCAAGAAGAAAACGTCGGTTCCTAAGCCGGATACCAAGGAGAATAAGAAGAAGACGACGGCCAAGGAGAAGAAGAGGGATAAAGATGACCCGA AGAAGAAGCATGGGGCCGGGCCGAGTTCGCCCGGAATCTGGAAAATATTCGGGTCGGGTTCTTTTAAATTGGGGCCGTCGTCGGCTCCATCGAGGAGAAA GAGATCTAACAGCACTAGCGACGCTGTCGCCGGATTATATGTCTCCGACAGCGAAGGGGCGGCGGCGGAGCAGTCAATGCAGGACGGAGCTCCGGGTTTG AGTCAGATGAGGCGGTTCGCCAGCGGGCATCGGCCTGATGGGTTCGGGAATTTCGATTGGACAGCTCATCAGATAGCGCCGGTGGAATCGGATTGCCGAG ATTACTCTGACGATGAGGAAGAGGAGGAGCAGAGAGGAGGGTACAGCGATGATGATATGGAGGAGGTGATCGTACCCTTCTCGACGAGGATTGCTGACGT GGAAGGGATGAGTTTGAAGCCAAGGAAAGAAGTGAATCTGTGGAAGAGGCGGACCATGGACCCGCCCCCGCCGCTTCAGTTGGTCGGATCTTCTTCGGTC AGGCCAAATTAA
AA sequence Show only first row Show all	>Lus10005623 pacid=23157201 polypeptide=Lus10005623 locus=Lus10005623.g ID=Lus10005623.BGIv1.0 annot-version=v1.0 MEKLQPPGHKSKSISNGGHQVLKFLKAASSINFNNPPFSPSRDNKPSSDHKLHNYPHPRSGFSGPLLPRVPRAVRGKFKSGDAQPEEPTSPTISCIGQIK HKSKKKTSVPKPDTKENKKKTTAKEKKRDKDDPKKKHGAGPSSPGIWKIFGSGSFKLGPSSAPSRRKRSNSTSDAVAGLYVSDSEGAAAEQSMQDGAPGL SQMRRFASGHRPDGFGNFDWTAHQIAPVESDCRDYSDDEEEEEQRGGYSDDDMEEVIVPFSTRIADVEGMSLKPRKEVNLWKRRTMDPPPPLQLVGSSSV RPN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76070			unknown protein		Lus10005623 [exp]	0	1
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040271 [exp]	4.9	0.9352
					Lus10038520 [exp]	5.0	0.9377
AT3G25570			Adenosylmethionine decarboxyla...		Lus10031919 [exp]	8.5	0.9154
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Lus10017618 [exp]	8.5	0.9267
AT4G28400			Protein phosphatase 2C family ...		Lus10008556 [exp]	11.7	0.9272
AT2G48020			Major facilitator superfamily ...		Lus10027975 [exp]	12.0	0.9195
AT4G09670			Oxidoreductase family protein ...		Lus10005674 [exp]	12.6	0.9244
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10020740 [exp]	14.5	0.9220
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10030446 [exp]	15.7	0.9006
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10016460 [exp]	19.0	0.9081

Compare expression of checked genes

Lus10005623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.