Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76080 417 / 9e-145 ATCDSP32, CDSP32 ARABIDOPSIS THALIANA CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD, chloroplastic drought-induced stress protein of 32 kD (.1) AT5G42980 65 / 1e-12 ATTRXH3, ATTRX3, ATH3 THIOREDOXIN H3, thioredoxin H-type 3, thioredoxin 3 (.1) AT1G19730 59 / 2e-10 ATTRX4, ATH4 thioredoxin H-type 4, Thioredoxin superfamily protein (.1) AT1G45145 57 / 6e-10 LIV1, ATTRX5, ATH5 LOCUS OF INSENSITIVITY TO VICTORIN 1, thioredoxin H-type 5 (.1) AT1G59730 57 / 7e-10 ATH7 thioredoxin H-type 7 (.1) AT3G51030 56 / 1e-09 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) AT3G08710 55 / 5e-09 TRXH9, ATH9 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) AT4G26160 56 / 7e-09 ACHT1 atypical CYS HIS rich thioredoxin 1 (.1) AT5G39950 54 / 1e-08 ATTRXH2, ATTRX2, ATH2 Arabidopsis thioredoxin h2, thioredoxin 2 (.1) AT4G29670 55 / 3e-08 ACHT2 atypical CYS HIS rich thioredoxin 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017245 [exp] 549 / 0 AT1G76080 416 / 2e-147 ARABIDOPSIS THALIANA CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD, chloroplastic drought-induced stress protein of 32 kD (.1) Lus10041799 [exp] 65 / 1e-12 AT3G51030 182 / 8e-61 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10028349 [exp] 64 / 3e-12 AT3G51030 179 / 1e-59 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10014277 [exp] 62 / 2e-11 AT3G51030 185 / 4e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10025979 [exp] 60 / 8e-11 AT3G51030 167 / 3e-55 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10005258 [exp] 57 / 1e-09 AT5G39950 189 / 4e-63 Arabidopsis thioredoxin h2, thioredoxin 2 (.1) Lus10007994 [exp] 61 / 2e-09 AT4G29670 268 / 6e-88 atypical CYS HIS rich thioredoxin 2 (.1.2) Lus10040554 [exp] 60 / 3e-09 AT4G29670 265 / 7e-87 atypical CYS HIS rich thioredoxin 2 (.1.2) Lus10030666 [exp] 56 / 3e-09 AT5G39950 189 / 3e-63 Arabidopsis thioredoxin h2, thioredoxin 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G245700 [exp] 422 / 9e-147 AT1G76080 418 / 3e-148 ARABIDOPSIS THALIANA CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD, chloroplastic drought-induced stress protein of 32 kD (.1) Potri.002G016401 [exp] 133 / 1e-37 AT1G76080 138 / 9e-42 ARABIDOPSIS THALIANA CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD, chloroplastic drought-induced stress protein of 32 kD (.1) Potri.007G018000 [exp] 60 / 7e-11 AT3G51030 186 / 2e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.018G066500 [exp] 59 / 1e-09 AT4G29670 253 / 3e-85 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.006G150700 [exp] 58 / 2e-09 AT4G29670 259 / 9e-88 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.017G076700 [exp] 55 / 8e-09 AT5G39950 168 / 7e-55 Arabidopsis thioredoxin h2, thioredoxin 2 (.1) Potri.016G138800 [exp] 54 / 2e-08 AT3G08710 208 / 1e-70 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.006G110100 [exp] 48 / 2e-06 AT3G08710 178 / 1e-58 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.005G232700 [exp] 46 / 5e-06 AT3G51030 162 / 5e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.001G416500 [exp] 45 / 8e-06 AT1G11530 162 / 1e-52 C-terminal cysteine residue is changed to a serine 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10005624 pacid=23157192 polypeptide=Lus10005624 locus=Lus10005624.g ID=Lus10005624.BGIv1.0 annot-version=v1.0 ATGGCTACACTCACTAACTCTCTCTCCAAATCCCCCTACTCTCCACTCCCACAAACCCCTAAACCCAAACCCACCACCACCAGTTTCCCTTTCCTAGCCA TCTCTACTAGCAGAACATCGTCCGCCGCTAAAGCCAGAGTCTCCTTATTCTCTACATCCGCCGCCGCCGCAAAAGAACGAACTCTATTCGTCACTAAAGC AACGGCCGGTGCTGCTCCGGGGACGTCGGAGAAGACGCCGGCGAAGGATGACGGCGAGAGGGTCCAAAAGATCCACAGCGCGGAGGAGTTGGACGACGCG CTTAAGGCTGCAAAGAACAAGCTGGTAGTGGTGGAATTCGCCGCCAGTACGAGCGTGCAGAGCAATAGAATGTACCCTTTCCTGGTTGCAGTGAAGGAAG GGTGGTACGCCCTGGAAAAAAGAGAGGGGAGAGAAGAGGGGAGGACCCCCCCGCTTGCGGCCGTTCATGTTTTCGAGCTAGGAGGGAAACCCGCCTCGAC TCCTGAATCGAAGATGGTTCTTGGGGAGCTAAGCTCCGAATGGGTGGAATGTGAACGTTGGCGGAGATTGGGAGCCGGCGACAGAATCCAAAGACAGACA AGGAGGAAGAAAAAGTATCATCAGCTCGTCACCGAAATCTCCATCTCTACTAGCAGAACATCGTCCGCCGCTAAAGCCAGAGTCTCCTTATTCTCTACAT CCGCCGCCGCCGCAAAAGAACGAACTCTATTCGTCACTAAAGCAACGGCCGGTGCTGCTCCGGGGACGTCGGAGAAGACGCCGGCGAAGGATGACGGCGA GAGGGTCCAAAAGATCCACAGCGCGGAGGAGTTGGACGACGCGCTTAAGGCTGCAAAGAACAAGCTGGTAGTGGTGGAATTCGCCGCCAGTACGAGCGTG CAGAGCAATAGAATGTACCCTTTCCTGGTTGAGCTCAGCCGGAACTGCGGCGACGTCGTTTTCCTGTTGGTTATGGGGGATGAGTCCGAGAAAACGAGGG AGCTTTGTCGGAGGGAGAAGATCCAGAAAGTTCCTCACTTCACCTTCTACAAGGGCACGGAGAAGATACACGAGGAGGAAGGGATAGGGCCGGACCAGCT GATGGGGGACGTGCTATACTACGGAGACAACCACAGCGCAGTGGTGCAGTTGCACTGCAGGGAAGACGTCGAGAAGCTGATCGCGGAGCATAAGGAGGAT CACAAGCTGATCGTGCTGGACGTAGGGCTGAAGCATTGTGGGCCTTGCGTGAAGGTGTATCCGACGGTTCTGAAGCTGTCGAGGCAGATGACAGATACGG TGGCGTTCGCACGGATGAATGGGGACGAGAACGACAGCTGTATGGATTTCCTGAGGGATATGAAGGTGATTGAAGTGCCGACGTTTTTGTTCATTAGGGA CGGGGAGATTAAAGGGAGGTACGTCGGGTCCGGTAAAGGTGAGTTGATCGGGGAGATTTTGAGATACCAAGGTGTTCGTGTGACCTATTAA
AA sequence Show only first row Show all	>Lus10005624 pacid=23157192 polypeptide=Lus10005624 locus=Lus10005624.g ID=Lus10005624.BGIv1.0 annot-version=v1.0 MATLTNSLSKSPYSPLPQTPKPKPTTTSFPFLAISTSRTSSAAKARVSLFSTSAAAAKERTLFVTKATAGAAPGTSEKTPAKDDGERVQKIHSAEELDDA LKAAKNKLVVVEFAASTSVQSNRMYPFLVAVKEGWYALEKREGREEGRTPPLAAVHVFELGGKPASTPESKMVLGELSSEWVECERWRRLGAGDRIQRQT RRKKKYHQLVTEISISTSRTSSAAKARVSLFSTSAAAAKERTLFVTKATAGAAPGTSEKTPAKDDGERVQKIHSAEELDDALKAAKNKLVVVEFAASTSV QSNRMYPFLVELSRNCGDVVFLLVMGDESEKTRELCRREKIQKVPHFTFYKGTEKIHEEEGIGPDQLMGDVLYYGDNHSAVVQLHCREDVEKLIAEHKED HKLIVLDVGLKHCGPCVKVYPTVLKLSRQMTDTVAFARMNGDENDSCMDFLRDMKVIEVPTFLFIRDGEIKGRYVGSGKGELIGEILRYQGVRVTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Lus10005624 [exp]	0	1
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10008281 [exp]	1.7	0.8648
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10038986 [exp]	5.8	0.8799
AT1G69740		HEMB1	Aldolase superfamily protein (...		Lus10042716 [exp]	6.3	0.8492
AT1G70480			Domain of unknown function (DU...		Lus10029147 [exp]	9.5	0.8329
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10037407 [exp]	9.5	0.8430
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Lus10031858 [exp]	9.8	0.8352
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10009710 [exp]	10.5	0.8427
AT4G23890		NdhS, CRR31	NADH dehydrogenase-like comple...		Lus10003880 [exp]	13.2	0.8180
					Lus10018772 [exp]	13.3	0.8726
AT3G05170			Phosphoglycerate mutase family...		Lus10035350 [exp]	13.6	0.7832

Compare expression of checked genes

Lus10005624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.