Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20330 567 / 0 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT1G76090 544 / 0 SMT3 sterol methyltransferase 3 (.1) AT5G13710 244 / 2e-78 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT1G64970 75 / 9e-15 VTE4, TMT1, G-TMT VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) AT1G73600 64 / 6e-11 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G18000 56 / 2e-08 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G48600 56 / 3e-08 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G23360 46 / 1e-05 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT2G41040 47 / 2e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G78140 46 / 2e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023995 [exp] 403 / 1e-141 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10004158 [exp] 140 / 2e-41 AT1G20330 142 / 9e-43 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10029498 [exp] 112 / 2e-28 AT5G13710 380 / 2e-133 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Lus10009537 [exp] 82 / 4e-17 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10020357 [exp] 76 / 2e-15 AT1G64970 434 / 7e-154 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10039600 [exp] 59 / 2e-10 AT5G13710 174 / 2e-54 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Lus10031348 [exp] 61 / 6e-10 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009056 [exp] 61 / 8e-10 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10042006 [exp] 56 / 3e-08 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G245800 [exp] 577 / 0 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.002G016300 [exp] 575 / 0 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.001G263700 [exp] 251 / 5e-81 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.009G058600 [exp] 244 / 2e-78 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.016G056000 [exp] 223 / 5e-70 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.013G077000 [exp] 65 / 2e-11 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.012G047400 [exp] 58 / 4e-09 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.015G039000 [exp] 58 / 6e-09 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G188600 [exp] 44 / 8e-05 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.018G120000 [exp] 43 / 0.0002 AT2G41040 418 / 6e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain CL0063 [flax] [poplar] PF08498 [flax] [poplar] Sterol_MT_C Sterol methyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Lus10005625 pacid=23157205 polypeptide=Lus10005625 locus=Lus10005625.g ID=Lus10005625.BGIv1.0 annot-version=v1.0 ATGGAGTCCCTCGCTCTCCTCATCACCGGCGGCGCACTCCTCGCCGCTGCCATGTACTGGTTCGTCTGCATTTTTGGTCCGGCCGAGCAGAAAGGTAAAC GCGCCGTCGATCTCTCCGCTGGCTCAATCTCGGCCGACCAAGTCCAGGACAACTACAAACAATACTCGTCTTTCTTTCGCCGCCCTAAAGAGATCAACAA CGCCGACAAAGTCCCCGACTTCGTCGACACGTTCTACAACCTCGTTACGGATATTTACGAGTGGGGGTGGGGCCAATCCTTCCATTTCGCGCCATCCATC CCGGGAAAATCCCACGCTGAGACCACGCGCATCCACGAAATAGCAGTCGTCGATCTGATCAAAGCCAAGCCGGGAGATCGAATCCTGGACGTGGGATGCG GAATTGGTGGGCCCATGCGAGCCATTACTGCCCACTCACGCTCCAACGTCGTTGGAATTACGATTAATGACTATCAGGTTCACCGCGCCCGTATCCACAA CAAGAAAGTCGGCCTTGACGCGCTGTGCGAGGTCGTGCAAGGCAACTTCCTGGACATGCCGTTTCAAGACTCCACCTTCGACGGCGCATACGCCTTCGAG GCGACCTGCCACGCGCCGCAGCTAGCTGATGTCTACGCAGAGATCTTCCGCGTACTGAAGCCCGGTTCCATGTACATTACCTACGAGTGGGTGACCACGG AAGTATTCCGGTCTGACAATGCCGAACACGTGGATATCATCCATAACATCGAGAGAGGGAACGCCCTTCCCGGTTTGAGGAGCTACAAAGACATTGCGGC GACAGCGAGGGAGGTTGGGTTTGAGGTGGTGGCGGAGAAGGATTTAGCTGCGCCGCCAGCGGGGCAGTGGTGGACAAGACTTAAGATGGGGAGGACCGCT TACAGGAGGAATCACATATTGGTAACGGTGCTGGCGGCGCTAGGGATTGCACCGAAAGGGACGGTGGGTGTTCACGAGATGCTGTGCGATGCGGCTGTTT ACTTGACTAAAGGAGGGGAGAAGGGAATTTTTAGCCCGATGCATATGGTGCTTTGTAGAAAGCCACTTCAGGAAACGGAACCCTGA
AA sequence Show only first row Show all	>Lus10005625 pacid=23157205 polypeptide=Lus10005625 locus=Lus10005625.g ID=Lus10005625.BGIv1.0 annot-version=v1.0 MESLALLITGGALLAAAMYWFVCIFGPAEQKGKRAVDLSAGSISADQVQDNYKQYSSFFRRPKEINNADKVPDFVDTFYNLVTDIYEWGWGQSFHFAPSI PGKSHAETTRIHEIAVVDLIKAKPGDRILDVGCGIGGPMRAITAHSRSNVVGITINDYQVHRARIHNKKVGLDALCEVVQGNFLDMPFQDSTFDGAYAFE ATCHAPQLADVYAEIFRVLKPGSMYITYEWVTTEVFRSDNAEHVDIIHNIERGNALPGLRSYKDIAATAREVGFEVVAEKDLAAPPAGQWWTRLKMGRTA YRRNHILVTVLAALGIAPKGTVGVHEMLCDAAVYLTKGGEKGIFSPMHMVLCRKPLQETEP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10005625 [exp]	0	1

Compare expression of checked genes

Lus10005625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.