Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35790 940 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT2G42010 756 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G00240 743 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11840 732 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11850 724 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G11830 714 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT1G52570 580 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT3G15730 576 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT5G25370 568 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT1G55180 440 / 9e-144 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004156 [exp] 1291 / 0 AT4G35790 1079 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10041855 [exp] 936 / 0 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10001293 [exp] 911 / 0 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10012699 [exp] 910 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10028401 [exp] 888 / 0 AT4G35790 1050 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10006819 [exp] 748 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 741 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10006718 [exp] 698 / 0 AT2G42010 1264 / 0.0 phospholipase D beta 1 (.1) Lus10014146 [exp] 697 / 0 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G016100 [exp] 1053 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 1025 / 0 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G105600 [exp] 973 / 0 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.007G060300 [exp] 966 / 0 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G015000 [exp] 905 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.014G074700 [exp] 733 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.002G152100 [exp] 729 / 0 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.001G112100 [exp] 728 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.018G131200 [exp] 580 / 0 AT1G52570 1204 / 0.0 phospholipase D alpha 2 (.1) Potri.006G253900 [exp] 572 / 0 AT3G15730 1144 / 0.0 phospholipase D alpha 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0479 [flax] [poplar] PLD PF00614 [flax] [poplar] PLDc Phospholipase D Active site motif CL0479 [flax] [poplar] PF12357 [flax] [poplar] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Lus10005627 pacid=23157236 polypeptide=Lus10005627 locus=Lus10005627.g ID=Lus10005627.BGIv1.0 annot-version=v1.0 ATGATCTCGTGCGCGGCGGCATCGCTCACCGACAGCATGGTTCATGAGATGCGTGATGTCTACCTCCACGGCGATCTACATCTTACGATCGTGGAAGCTA GGCAGTTGCCGAACATGGATTTGCTGTCGGAGCGTGTCCGGCGGTTGTTTTCTGGGGTGCCTCTATCTCGGGAGGCTATCTCACGACCCTCGCGGGGAGG CCGGGAGTGCGCCGTCCCCGTAGCTCGGATCGTCGCCGGCCAGTGCGTACGGGAATGGTTCCCGATCATCAGTTCCTACGGGAAGCCGCCGAAGCCCGAC TGTGCGATGCTGATCGAGATGAAATTCGTCAAGTGCGAGGAGAATCCGCTATACAAAATCGGGTTGGCGGCGAACCCAAACCGGCATGGGAAGTGCTGGG AAGAGATTTCGGAGGCAATATCGGAAGCTCACCATTTGGTTTATGTGGTTGGATGGTCGGTGTTTCATAAGGTGAAATTGGTGCGGGAACCCAGCAAGCC ATTGTCCAGCGGTGGGAATTTGAGCTTGGGAGATTTGCTCAAGTATAAATCCCAGGAAGGTGTTAGAGTTCTGATGCTGGTTTGGGATGACAAGACTTCT CATAGCAAGTTCTTCATTAACACGGCGGGAGTAATGCAAACCCATGACGAGGAGACTCGAAAGTTCTTCAAGCATTCTTCTGTGAAATGTGTGCTGTCGC CACGATATGCCAGCAATGTGAAGAAAACTGTTGTCGGGACCCTATTTACACACCATCAGAAATGTGTGATTGTGGATACACAAGCTTCCGGAAATAACAG GAAGATAACCGCTTTCCTCGGAGGCCTAGATCTTTGCGATGGCCGCTATGACACACCTGAGCACCGTCTATATCGCGATGTTGACACTGTGTTCGATGGA GATTTTCATAATCCGACCCTTCCTCTTGGAGCTAAGGGTCCAAGGGAACCATGGCATGATCTGCATTGCAAAATTGAAGGACCAGCTGCTTACGATGTAC TGACAAATTTTGAGCAGCGCTGGAAGAAAGCCGCCAAATGGTCAGAGTTTGGACGAAGGTTCAAAACAGTAAGCCATTGGCACGATGACTCCTTAATAAA GTTAGAGAGGATCTCATGGATACTTAGTCCCTCGCCATCCGTTGCCAGTGATGATCCTTCACTGTGGGTTACTGAGGAAAAAGACCCTGAAAAATGGCAC GTTCAGGTCTTCCGGTCTATAGATTCGGGATCTTTGAAAGGGTTTCCCAAAGATGTTTTCCAGGCAGAGGCGCAGAATCTGGCCTGTGCTAAAAATTTGG TGATTGACTGGAGCATTCAAACAGCTTACATTCAGGCAATAAGATCTGCCCAACACTTTGTATATATTGAGAACCAGTACTTCATCGGATCCTCTTATGC ATGGCCAGCTTACAAAGAAGCAGGTGCCGATAATTTAATTCCAATGGAGCTGGCATTGAAGATCTGTAGCAAGATAAGGGCGAGAGAGAAGTTTGCTGTT TACATTGTCATACCAATGTGGCCCGAGGGGCTTCCTTCTTCCACCACGGTGCAAGAGATCCTATTTTGGCAAGGACAGACAATGCAAATGATGTATAGAC TGATAGCAGAAGAGCTGAAATCCATGAATATGGAGGATGCCCACCCTCAAGATTACTTGAACTTCTTCTGCCTTGGCAACAGAGAGAAACTCCCTAAAGA CAAGTTGCCTAGCTCTACCACCAAACCTTCCAACGCGGCTGAAATGATCTCAAGCTGCCACAAGCGCCAACGGTTCATGATCTACGTGCACGCAAAGGGG ATGATCGTAGACGACGAGTATGTTATCATTGGATCAGCAAATATCAACCAAAGATCAATGTCGGGTTCACGCGACACCGAGATAGCAATGGGAGGGTACC AGCCAAACCACACTTGGGGCAACAAGAAACGACACCCTAGAGGGCAGGTGTATGGATACAGAATGTCTCTATGGGCAGAGCACTTAGGGAAAATCGATGA GGTGTATAAAGAGGCAGAGAGTGCGGAATGCGTCAAGGAAGTGAACAAAGTTGCAGAAGAGAACTGGGAGAAATTCACTTCAGTCAAGTTTAAGCCTTTG CAGGGACACCTTCTCAAGTACCCAGTCCAGGTTGATCAAGATGGGAAAGTAAATCCTTTGCCTGGACATGAGACTTTCCCAGATGTTGGTGGCAAAGTTC TTGGAGCTCGTACAACACTTCCTGATGCATTGACTACATAG
AA sequence Show only first row Show all	>Lus10005627 pacid=23157236 polypeptide=Lus10005627 locus=Lus10005627.g ID=Lus10005627.BGIv1.0 annot-version=v1.0 MISCAAASLTDSMVHEMRDVYLHGDLHLTIVEARQLPNMDLLSERVRRLFSGVPLSREAISRPSRGGRECAVPVARIVAGQCVREWFPIISSYGKPPKPD CAMLIEMKFVKCEENPLYKIGLAANPNRHGKCWEEISEAISEAHHLVYVVGWSVFHKVKLVREPSKPLSSGGNLSLGDLLKYKSQEGVRVLMLVWDDKTS HSKFFINTAGVMQTHDEETRKFFKHSSVKCVLSPRYASNVKKTVVGTLFTHHQKCVIVDTQASGNNRKITAFLGGLDLCDGRYDTPEHRLYRDVDTVFDG DFHNPTLPLGAKGPREPWHDLHCKIEGPAAYDVLTNFEQRWKKAAKWSEFGRRFKTVSHWHDDSLIKLERISWILSPSPSVASDDPSLWVTEEKDPEKWH VQVFRSIDSGSLKGFPKDVFQAEAQNLACAKNLVIDWSIQTAYIQAIRSAQHFVYIENQYFIGSSYAWPAYKEAGADNLIPMELALKICSKIRAREKFAV YIVIPMWPEGLPSSTTVQEILFWQGQTMQMMYRLIAEELKSMNMEDAHPQDYLNFFCLGNREKLPKDKLPSSTTKPSNAAEMISSCHKRQRFMIYVHAKG MIVDDEYVIIGSANINQRSMSGSRDTEIAMGGYQPNHTWGNKKRHPRGQVYGYRMSLWAEHLGKIDEVYKEAESAECVKEVNKVAEENWEKFTSVKFKPL QGHLLKYPVQVDQDGKVNPLPGHETFPDVGGKVLGARTTLPDALTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10005627 [exp]	0	1
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10014184 [exp]	11.7	0.8779
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10023857 [exp]	15.4	0.8714
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029981 [exp]	19.4	0.8669
AT1G23460			Pectin lyase-like superfamily ...		Lus10029139 [exp]	19.8	0.8683
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10032425 [exp]	20.7	0.8700
AT4G23500			Pectin lyase-like superfamily ...		Lus10017517 [exp]	21.5	0.8259
AT5G12950			Putative glycosyl hydrolase of...		Lus10031829 [exp]	21.9	0.8609
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025142 [exp]	25.5	0.8002
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028243 [exp]	27.1	0.8645
AT4G24430			Rhamnogalacturonate lyase fami...		Lus10030233 [exp]	28.8	0.8119

Compare expression of checked genes

Lus10005627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.