Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004154 [exp] 366 / 2e-128 AT5G11880 53 / 2e-07 Pyridoxal-dependent decarboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G246300 [exp] 254 / 5e-84 AT3G14390 58 / 6e-09 Pyridoxal-dependent decarboxylase family protein (.1) Potri.002G015800 [exp] 241 / 4e-79 AT5G11880 54 / 1e-07 Pyridoxal-dependent decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF02784 [flax] [poplar] Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain CL0036 [flax] [poplar] PF00278 [flax] [poplar] Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Representative CDS sequence Show only first row Show all	>Lus10005629 pacid=23157227 polypeptide=Lus10005629 locus=Lus10005629.g ID=Lus10005629.BGIv1.0 annot-version=v1.0 ATGCAGTCGGACGGATCTTTTAGCGATACGGCTTTTCGGCTCGGGATGCCGCGAATGCACATGCTGGACATTGGGGGAGGTTTCACCTCCGGCTCGCAAT TCGAAGATGCAGCTACGGAAATCCGAGCCGCGCTGGATGAGTATTTCTTAGGGGAGCCGGGTCTGAAGGTGATAAGCGAGCCCGGTCGGTTCTTTTCGGA ATCTGCTTTCACTTTAGCGGCCACGATCATCGGGAAGCGCGTGAGGGGAGGGCAACGGGAGTATTGGATAAACGACGGCCTTTACGGGTCGATGAATTGC ATTCTTTACGACCACGCGACCGTTAGGTGCGCGCCTTTGGCGTTAGTTTCAAACCCTGGGGACCCTACGTGCGAAGTGGCGGCGGCCAAGTACAGCTCGA CGGTGTTTGGTCCCACGTGCGACGCCCTTGACACGGTGTTCACTGGGCGGCTGCTGCCGGAGCTTAAGGTCAATGACTGGCTAGTGTTTCCGGGCATGGG GGCCTATACGGCGGCTGCCGGGTCAAACTTTAATGGGTTCAATGCTGATCGAATTTTGACTCATCTTGCCTACACTACTACTACTGTTAATCCCAATTGA
AA sequence Show only first row Show all	>Lus10005629 pacid=23157227 polypeptide=Lus10005629 locus=Lus10005629.g ID=Lus10005629.BGIv1.0 annot-version=v1.0 MQSDGSFSDTAFRLGMPRMHMLDIGGGFTSGSQFEDAATEIRAALDEYFLGEPGLKVISEPGRFFSESAFTLAATIIGKRVRGGQREYWINDGLYGSMNC ILYDHATVRCAPLALVSNPGDPTCEVAAAKYSSTVFGPTCDALDTVFTGRLLPELKVNDWLVFPGMGAYTAAAGSNFNGFNADRILTHLAYTTTTVNPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005629 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025902 [exp]	2.0	0.9957
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008917 [exp]	3.2	0.9926
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Lus10019461 [exp]	3.7	0.9939
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10019460 [exp]	4.6	0.9938
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10030531 [exp]	6.0	0.9926
AT1G14550			Peroxidase superfamily protein...		Lus10009900 [exp]	6.7	0.9901
					Lus10014508 [exp]	7.7	0.9924
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10043311 [exp]	8.8	0.9924
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Lus10043312 [exp]	9.2	0.9907
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10012724 [exp]	10.1	0.9899

Compare expression of checked genes

Lus10005629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.