Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38470 449 / 1e-153 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 427 / 3e-145 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 418 / 3e-141 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT2G24360 169 / 2e-47 Protein kinase superfamily protein (.1) AT4G31170 168 / 7e-47 Protein kinase superfamily protein (.1.2.3.4) AT1G62400 157 / 1e-43 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT5G58950 153 / 1e-40 Protein kinase superfamily protein (.1) AT1G67890 147 / 9e-38 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT5G11850 145 / 6e-37 Protein kinase superfamily protein (.1) AT5G50000 139 / 9e-37 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004153 [exp] 734 / 0 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10023989 [exp] 463 / 8e-159 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10012517 [exp] 440 / 2e-149 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 453 / 3e-146 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10041845 [exp] 389 / 9e-130 AT4G35780 791 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10022653 [exp] 366 / 6e-122 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10018895 [exp] 318 / 1e-102 AT4G35780 508 / 1e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10028590 [exp] 313 / 2e-100 AT4G35780 506 / 9e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10028392 [exp] 201 / 2e-59 AT4G35780 445 / 2e-153 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G015400 [exp] 538 / 0 AT4G38470 650 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 520 / 0 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 472 / 1e-162 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.009G139400 [exp] 470 / 2e-161 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 454 / 5e-155 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 424 / 2e-143 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 347 / 1e-115 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 303 / 3e-98 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.002G070000 [exp] 280 / 4e-88 AT4G38470 498 / 1e-171 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G190200 [exp] 275 / 6e-86 AT4G38470 500 / 2e-172 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10005630 pacid=23157224 polypeptide=Lus10005630 locus=Lus10005630.g ID=Lus10005630.BGIv1.0 annot-version=v1.0 ATGGGGGACACGGACAGCTGTAGCAGCAGAGCTGTGGAGTTCGTTCCGGCTCTGAATAGAAGTCGGAGGCAAAAAGTAGAGGTTTACAATGAAGTTCTCC GCCGGCTCAGGAATTCCAATGACCAAGAAGCTAGTCTCCCAGGCTTTGAAGACGAGCTGTGGAATCATTTCCTTCGGCTTCCTACTAGATATGCACTGGA AGTGAACGCAGAAAGGGCACATGACGTCCTTATGCACAAGAGATTGCTGCAGATGGCTCATGATCCTGCTACTAGGCCGGCAGTTGAGGTCCGGCTCGTG CAGGTTTATTCTGCAGCCCATGGACATTCTGCTGACTCTAGTGAAACTGAATTTTCCAAGGAAAAGCTACCTCAATTTTCTGATCAACCCTGGAAGCAGA GGCATGGTCTCCATCCACCACCTGCCTTTGGTTCATTGCCTGACCTAGAACTTGCATATGGAGCTCAAGATAAGGATACTGGCCGTGCAATTTACTCTCG GTACAAATTCTGGGAAGCTTTGCTTGTGAACTTATCGTTGTCCTGGTTTAAACCTCTCCAGCTACTTTTTTGTGTGTGCTTACAGTTGTTGACTTCCTTG CTCTCTGAGATTGAGCTAAATATACAAGAAGCGCATGCTTTTTCTACAACAGATGGGTACTCATTAGATGTGTTTGTTGTTGACAATTGGAGCCCTGAGG AGTTGGAGCAACTTAGGGTAGTGCTGGAGCGTGAAATACCAAAGATTGAGCAAGACCAAAGAGGAGCCAATTATAGATCTTCTGATATGAGCATTCCTAC TGCCTCGATCGATGTTTGGGAAATAGATGTGACATTATTGAAGTATGAATTCAAAATTGCATCTGGACCCTATGGTGACATGTATAAAGGTACCTTCTGT GGTCAAGATGTGGCTATTAAGCACTTCAGGGTGGAGCACCTAAGTGATAAACTTCAAAAGGAATTTGCTCAAGAAATCTTTATTCTGAGTTTGTTTATTC TATCCTGCTTGTTGTCAGAATTCATGTCTGGTGGAAGCATGTACGACTATCTGCATAAAAGAAAGGAAACTTTTACATGTCAGTCCTTGGTTAAAGTGGC AGCTGATGTATCCAGGGGAATGAACTACCTGCACAGAAATAATATAATACACAGAGACCTGAAAGCTGCCAATCTTCTAATGGATGAAAATGGAATAGTC AAGGTGGCTGATTTTGGTGTTTCCAGAATGCAAGATCATTCAGGTGTAATGACTGCAGAAACTGGAACATACCGTTGGATGGCTCCAGAGGTTATTGGAC ACAAGCCTTACAATCATAAAGCTGATGTATTCAGCTTTGGTGTTGTGTTGTGGGAATTGCTTACAGGGAAGATTCCTTATGAAAACTTAACCCCATTACA AGCTGCAGTTGGTGTTGTACAACAGGATCATCTTAAATCACTACAATCTTTGAACAGGAGGAAGGAGAAGACAGAGTGA
AA sequence Show only first row Show all	>Lus10005630 pacid=23157224 polypeptide=Lus10005630 locus=Lus10005630.g ID=Lus10005630.BGIv1.0 annot-version=v1.0 MGDTDSCSSRAVEFVPALNRSRRQKVEVYNEVLRRLRNSNDQEASLPGFEDELWNHFLRLPTRYALEVNAERAHDVLMHKRLLQMAHDPATRPAVEVRLV QVYSAAHGHSADSSETEFSKEKLPQFSDQPWKQRHGLHPPPAFGSLPDLELAYGAQDKDTGRAIYSRYKFWEALLVNLSLSWFKPLQLLFCVCLQLLTSL LSEIELNIQEAHAFSTTDGYSLDVFVVDNWSPEELEQLRVVLEREIPKIEQDQRGANYRSSDMSIPTASIDVWEIDVTLLKYEFKIASGPYGDMYKGTFC GQDVAIKHFRVEHLSDKLQKEFAQEIFILSLFILSCLLSEFMSGGSMYDYLHKRKETFTCQSLVKVAADVSRGMNYLHRNNIIHRDLKAANLLMDENGIV KVADFGVSRMQDHSGVMTAETGTYRWMAPEVIGHKPYNHKADVFSFGVVLWELLTGKIPYENLTPLQAAVGVVQQDHLKSLQSLNRRKEKTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10005630 [exp]	0	1
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10005490 [exp]	3.5	0.7593
AT4G36980			unknown protein		Lus10019346 [exp]	3.5	0.7967
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10001338 [exp]	6.8	0.7603
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10014018 [exp]	9.2	0.7260
AT5G03330			Cysteine proteinases superfami...		Lus10013813 [exp]	10.4	0.7471
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10027025 [exp]	15.0	0.7407
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10018701 [exp]	17.0	0.7017
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10014317 [exp]	17.9	0.7289
AT1G69840			SPFH/Band 7/PHB domain-contain...		Lus10037213 [exp]	19.6	0.7540
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10027024 [exp]	19.9	0.7591

Compare expression of checked genes

Lus10005630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.