Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14810 144 / 3e-39 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT1G53470 135 / 2e-36 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT1G78610 135 / 3e-36 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT2G17010 130 / 1e-34 Mechanosensitive ion channel family protein (.1) AT2G17000 128 / 7e-34 Mechanosensitive ion channel family protein (.1) AT5G12080 121 / 2e-31 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 118 / 2e-30 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004153 [exp] 259 / 2e-79 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10013692 [exp] 139 / 1e-39 AT1G53470 496 / 6e-170 mechanosensitive channel of small conductance-like 4 (.1) Lus10038148 [exp] 144 / 2e-39 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10005556 [exp] 142 / 3e-39 AT1G53470 758 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10012515 [exp] 137 / 5e-39 AT1G78610 421 / 1e-141 mechanosensitive channel of small conductance-like 6 (.1) Lus10042499 [exp] 142 / 1e-38 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10025092 [exp] 142 / 2e-38 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10023990 [exp] 140 / 4e-38 AT1G78610 762 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10022654 [exp] 139 / 1e-37 AT1G78610 817 / 0.0 mechanosensitive channel of small conductance-like 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G246600 [exp] 176 / 1e-50 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Potri.001G384100 [exp] 136 / 1e-36 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.004G178900 [exp] 136 / 2e-36 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.006G144100 [exp] 135 / 3e-36 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.011G105500 [exp] 134 / 4e-36 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.006G222500 [exp] 121 / 2e-31 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G073000 [exp] 119 / 9e-31 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 110 / 1e-27 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [flax] [poplar] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Lus10005632 pacid=23157229 polypeptide=Lus10005632 locus=Lus10005632.g ID=Lus10005632.BGIv1.0 annot-version=v1.0 ATGAAAGACGAGTCTTCGTTGCACATCAGGAGTGTTTGCCAAGCAAAGGAAGCAGCCAAGAAAATATTTGCTAATGTGGCAGCTCCAGGATTCCAGCATA TCTTCATTGCCGCCTTGCTGCGCTTCATGGCTAAAGAAGAGGCCTTGAGAGCCATGCATCACTTTGGACCAGGATCTGAGAATGGAGGGATTAGCAGATC ATTACTAACTGAGTGGCGGATGAGAGTGGAGGAGATGAACATCTTAACCACAGTGTTGCTCAAGTCCAATTACCAGAAGATCACATTCCCAAACAGTGTT CTCTCCACCAAACCGATCTCCAATTTCTACTGCAGCCCAGATATGACAGAGGCGATCCACTTTTGTGTCCACATCTCAACTCCAATGGACAAGATCTCCG CTATGAACGACCGGCTAAAAGCATATTTGCTGGCCTCTCTCGCAGGTACGTGGAGCGGCATAAGCAGTACTGGCACCCAACGGCGTCAGTGTTTTATAAA TGAGGTGGAAGACATGAACAAATTGCAGATGCAAGTTGCTGCGAGGCACAGGATGAACTTCCAGAATATGGGAGACAGATTTACGAGGAGAGGGCATCTA ATTAAACAACTTATCACAATGTTTCGAGACTTGGAACTCGAGTACCGAATGCTTCCACTTGATGTGAACATGAGAAATCTGTCGTAA
AA sequence Show only first row Show all	>Lus10005632 pacid=23157229 polypeptide=Lus10005632 locus=Lus10005632.g ID=Lus10005632.BGIv1.0 annot-version=v1.0 MKDESSLHIRSVCQAKEAAKKIFANVAAPGFQHIFIAALLRFMAKEEALRAMHHFGPGSENGGISRSLLTEWRMRVEEMNILTTVLLKSNYQKITFPNSV LSTKPISNFYCSPDMTEAIHFCVHISTPMDKISAMNDRLKAYLLASLAGTWSGISSTGTQRRQCFINEVEDMNKLQMQVAARHRMNFQNMGDRFTRRGHL IKQLITMFRDLELEYRMLPLDVNMRNLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14810		MSL5	mechanosensitive channel of sm...		Lus10005632 [exp]	0	1
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10005631 [exp]	1.0	0.9456
AT4G10270			Wound-responsive family protei...		Lus10031616 [exp]	2.2	0.8653
AT1G11300			protein serine/threonine kinas...		Lus10013245 [exp]	4.9	0.8784
AT3G25710	bHLH	TMO5, BHLH32, b...	TARGET OF MONOPTEROS 5, basic ...		Lus10036175 [exp]	11.1	0.8005
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10028432 [exp]	12.2	0.8884
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10031723 [exp]	12.3	0.8434
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10029152 [exp]	15.6	0.8277
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10009911 [exp]	15.9	0.8447
AT4G13780			methionine--tRNA ligase, putat...		Lus10010450 [exp]	16.1	0.7908
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10014338 [exp]	16.7	0.8168

Compare expression of checked genes

Lus10005632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.