Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06060 275 / 2e-94 LisH and RanBPM domains containing protein (.1) AT1G61150 83 / 2e-19 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) AT1G35470 72 / 2e-14 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) AT4G09340 61 / 8e-11 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004152 [exp] 438 / 4e-159 AT1G06060 275 / 2e-94 LisH and RanBPM domains containing protein (.1) Lus10011219 [exp] 77 / 6e-17 AT1G61150 392 / 6e-140 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Lus10018464 [exp] 77 / 9e-17 AT1G61150 392 / 9e-140 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Lus10009451 [exp] 66 / 1e-12 AT1G35470 601 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10001544 [exp] 66 / 2e-12 AT1G35470 604 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10008254 [exp] 51 / 2e-07 AT1G35470 309 / 3e-102 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G029700 [exp] 318 / 9e-112 AT1G06060 283 / 1e-97 LisH and RanBPM domains containing protein (.1) Potri.005G233000 [exp] 248 / 4e-84 AT1G06060 201 / 3e-65 LisH and RanBPM domains containing protein (.1) Potri.011G046200 [exp] 81 / 1e-18 AT1G61150 383 / 3e-136 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Potri.004G037600 [exp] 74 / 5e-16 AT1G61150 384 / 3e-137 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Potri.013G108400 [exp] 73 / 5e-15 AT1G35470 607 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.019G080800 [exp] 66 / 2e-12 AT1G35470 610 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10607 [flax] [poplar] CLTH CTLH/CRA C-terminal to LisH motif domain
Representative CDS sequence Show only first row Show all	>Lus10005633 pacid=23157231 polypeptide=Lus10005633 locus=Lus10005633.g ID=Lus10005633.BGIv1.0 annot-version=v1.0 ATGGACGTTGATCCTCCTAGCTACGACCACGTTACTATCAAAGACTGTGATGTCCAAGACATCATTCTTTCTTACCTTGTTCACAATTGCTACAAGGAAA CCGTGGAATCTTTTGTGTCTTCCACTGGGATGAACCAGCCTCCCGATTATCTTCAAGGCATAGAGAAAAGGAAAAAAATATTCCAGTATGCGCTAGAGGG AAATGCACTCAAGGCTATTGAGCTAACAGAACAACTAGCACCGGATTTACTAGAGAAGAACCAGGACTTGCATTTTGACCTATTGAGCCTTCATTTTGTT GAGCTTGTCTGCTCGAGGAAGTGCCACGGGGCTTTGGAATTTGCACAGGCAAAGCTAACACAGTTCGGGAAGGTGCAGAAGTATGTTGAAAAACTTGAAG ACTTCATGGCTCTGCTTGCCTATGAGGAGCCTGAGAAATCTCCCATGTTTCATCTCCTCAGCTTGGAGCATCGCCAGCAAGTGGTTGATTGTTTGAACCG AGCTATTCTTGCACACACAAGTCTTCCGAGCCACACACCAATAGAGAGGTTGATACAGCAGACGACAGTCGTCAGTCAACTGCTGAATCAAGATAATGCG AAGGATGAGCATCCACCATTTGCTTTGAAGGATTTTCTCAAAGGCTAG
AA sequence Show only first row Show all	>Lus10005633 pacid=23157231 polypeptide=Lus10005633 locus=Lus10005633.g ID=Lus10005633.BGIv1.0 annot-version=v1.0 MDVDPPSYDHVTIKDCDVQDIILSYLVHNCYKETVESFVSSTGMNQPPDYLQGIEKRKKIFQYALEGNALKAIELTEQLAPDLLEKNQDLHFDLLSLHFV ELVCSRKCHGALEFAQAKLTQFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEHRQQVVDCLNRAILAHTSLPSHTPIERLIQQTTVVSQLLNQDNA KDEHPPFALKDFLKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06060			LisH and RanBPM domains contai...		Lus10005633 [exp]	0	1
AT2G33735			Chaperone DnaJ-domain superfam...		Lus10014901 [exp]	2.8	0.8495
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10018672 [exp]	7.2	0.8380
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10002638 [exp]	7.4	0.8529
AT5G16650			Chaperone DnaJ-domain superfam...		Lus10000010 [exp]	10.5	0.8191
AT3G58670			Protein of unknown function (D...		Lus10033603 [exp]	13.2	0.8326
AT3G23325			Splicing factor 3B subunit 5/R...		Lus10011813 [exp]	14.9	0.8121
AT3G60300			RWD domain-containing protein ...		Lus10009773 [exp]	17.0	0.8375
AT2G27285			Coiled-coil domain-containing ...		Lus10038787 [exp]	18.2	0.8130
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10021175 [exp]	21.1	0.8464
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022929 [exp]	22.3	0.8246

Compare expression of checked genes

Lus10005633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.