Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30860 177 / 8e-56 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT2G30870 174 / 2e-54 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT3G03190 167 / 5e-52 ATGSTF6, ATGSTF11 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) AT1G02950 160 / 9e-49 GST31, ATGSTF4 GLUTATHIONE S-TRANSFERASE 31, glutathione S-transferase F4 (.1.2.3.4) AT2G47730 158 / 1e-47 GST6, ATGSTF5, ATGSTF8 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) AT5G17220 152 / 6e-46 GST26, TT19, ATGSTF12 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) AT3G62760 143 / 2e-42 ATGSTF13 Glutathione S-transferase family protein (.1) AT1G02940 142 / 1e-41 ATGSTF5 glutathione S-transferase (class phi) 5 (.1) AT1G02930 140 / 1e-41 ATGST1, GST1, ERD11, ATGSTF3, ATGSTF6 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) AT1G02920 140 / 2e-41 ATGST11, GST11, ATGSTF8, ATGSTF7 ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, glutathione S-transferase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004151 [exp] 390 / 1e-139 AT2G30860 194 / 1e-62 glutathione S-transferase PHI 9 (.1.2) Lus10001419 [exp] 194 / 1e-62 AT2G30860 297 / 3e-103 glutathione S-transferase PHI 9 (.1.2) Lus10020735 [exp] 190 / 7e-61 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10029815 [exp] 184 / 9e-59 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10020736 [exp] 184 / 2e-58 AT2G30860 308 / 6e-108 glutathione S-transferase PHI 9 (.1.2) Lus10040393 [exp] 184 / 2e-58 AT3G03190 263 / 1e-89 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Lus10029816 [exp] 180 / 5e-57 AT2G30860 308 / 1e-107 glutathione S-transferase PHI 9 (.1.2) Lus10026643 [exp] 166 / 2e-51 AT2G47730 269 / 2e-91 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) Lus10023511 [exp] 165 / 6e-51 AT5G17220 240 / 2e-80 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G015200 [exp] 296 / 9e-103 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G015100 [exp] 261 / 8e-89 AT3G03190 196 / 2e-63 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.017G138800 [exp] 173 / 3e-54 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.002G207093 [exp] 170 / 4e-53 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207286 [exp] 165 / 4e-51 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207479 [exp] 164 / 6e-51 AT1G02930 267 / 1e-91 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207672 [exp] 154 / 1e-46 AT3G62760 302 / 2e-105 Glutathione S-transferase family protein (.1) Potri.014G132200 [exp] 152 / 3e-46 AT3G62760 295 / 2e-102 Glutathione S-transferase family protein (.1) Potri.001G105600 [exp] 59 / 2e-10 AT5G41210 358 / 1e-126 glutathione S-transferase THETA 1 (.1) Potri.004G226300 [exp] 54 / 2e-08 AT1G57720 323 / 3e-107 Translation elongation factor EF1B, gamma chain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10005634 pacid=23157217 polypeptide=Lus10005634 locus=Lus10005634.g ID=Lus10005634.BGIv1.0 annot-version=v1.0 ATGAGATCTTCTCTCTCTAAGAGGCCAGTGATTGTTTATATAGTCAGGGGGCAGAGCGTTGAACGTTCGATTGAACCGAGAGTGCTAGCTTGCCCTATCG AAAAGGATGTCCCTTTTCAGCTCGTCCCAGTGGATATGTCCAAAGGTGAACACAAGAAGCCTGATTTCCTCAACATCCAGCCCTTCGACCAAGTCCCTGC CTTCCCAGACGACCACATCTCCCTCTTCGAGTCAAGAGCAATCTGCCGGTACATATGTTTCAAGTACCCAACCAAAGGTAACAAGTCATTGTACGGCCCA GACCCACTATCCCAAGCCTCCATCGACCAATGGCTAGAAGCAGAGTCGCAGTCCTTCAACCCACCAAGCGGCACCCTCGTTTTCCAACTCGCTTTCGCAC CGAGGATGAAGATCCCGCAGGACAAGAAAGCAATCAAGCTCAACGAGGACAAGCTGGGGAAAATTCTGGACGTGTACGATAATAGGCTATGCGAAAGCCG GTATTTGGCCAGCGACCAGTTCTCGCTGGCCGACCTTTCTCACTTGCCCAACGCCGATTACCTGGTGACGGCGGCTGGAAAGGAAGAGATGTTCAGCTCG AGGAAGAATGTTGGGAGGTGGTTGGATGAAGCTATTGGGAGGGAAAGTTGGAAGACAGTCAAGGAGTTACGCAACAACTGA
AA sequence Show only first row Show all	>Lus10005634 pacid=23157217 polypeptide=Lus10005634 locus=Lus10005634.g ID=Lus10005634.BGIv1.0 annot-version=v1.0 MRSSLSKRPVIVYIVRGQSVERSIEPRVLACPIEKDVPFQLVPVDMSKGEHKKPDFLNIQPFDQVPAFPDDHISLFESRAICRYICFKYPTKGNKSLYGP DPLSQASIDQWLEAESQSFNPPSGTLVFQLAFAPRMKIPQDKKAIKLNEDKLGKILDVYDNRLCESRYLASDQFSLADLSHLPNADYLVTAAGKEEMFSS RKNVGRWLDEAIGRESWKTVKELRNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10005634 [exp]	0	1
AT3G62930			Thioredoxin superfamily protei...		Lus10029441 [exp]	2.4	0.7708
AT5G06410			DNAJ heat shock N-terminal dom...		Lus10033940 [exp]	4.2	0.7505
AT1G48360			zinc ion binding;nucleic acid ...		Lus10037442 [exp]	10.7	0.7395
AT3G62930			Thioredoxin superfamily protei...		Lus10005941 [exp]	11.1	0.7525
AT3G62930			Thioredoxin superfamily protei...		Lus10029440 [exp]	13.7	0.7069
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10000020 [exp]	17.7	0.7261
AT3G48200			unknown protein		Lus10002461 [exp]	31.7	0.7370
AT3G07190			B-cell receptor-associated pro...		Lus10025914 [exp]	36.3	0.7061
					Lus10009699 [exp]	39.9	0.7352
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10011717 [exp]	42.6	0.7227

Compare expression of checked genes

Lus10005634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.