Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76110 243 / 9e-79 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G04880 140 / 5e-38 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT3G13350 116 / 4e-30 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G55650 94 / 1e-21 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021228 [exp] 392 / 4e-137 AT1G76110 375 / 4e-130 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10016671 [exp] 139 / 1e-37 AT1G04880 365 / 5e-123 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10007127 [exp] 138 / 3e-37 AT1G04880 376 / 3e-127 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G246700 [exp] 243 / 7e-79 AT1G76110 350 / 2e-120 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.017G055200 [exp] 150 / 8e-42 AT1G04880 364 / 3e-122 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.011G168800 [exp] 137 / 4e-38 AT3G13350 307 / 3e-104 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.001G315200 [exp] 98 / 8e-23 AT1G04880 376 / 6e-128 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01388 [flax] [poplar] ARID ARID/BRIGHT DNA binding domain CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Lus10005636 pacid=23157221 polypeptide=Lus10005636 locus=Lus10005636.g ID=Lus10005636.BGIv1.0 annot-version=v1.0 ATGTCGCCGGCGGCAAAGAAAATGCCGGTGGAGGAACGGTACCCTTCCCCTCTAGCTTCCCATGAGGATGTTTTCAAAAACGCTCTAGCTTCCCATGAGG ATGTTGTCAAAGACGCCAAACTCTTTTGGGACACCCTCCAGAAGTTCCACTCCCAAATCGGAACCAAGTTCATGGTTCCTCCCCCCCCCCCTGCTTCTCC TCTTAAATGGAGGAATAGTTCCATTAAATTTTGTGGACTTGTCTGTTTTCTTTATCAGGTGGTTGCAGAGAAGAAATGGAGGGAAGTGGGGATAGTGTTT CAATTCTCACCAACGACCACAAGTGCTTCGTTTGTGCTGAGGAAGCATTACCTTAACATCCTTTACCATTATGAACAAGTTCATTTGTTTAGGATTCAGG GTCCAATTTTTCATCCAACTGCAACATTTCCTGCGAATGGATCTTCTTCAAGCAGGTCTGAATTGGACATTGTGGAATATCCTGCAACAAAACTTCCTGC AGATCTTCCTGCTAAAGAAGGAGTAGGAGGAGAGTCCACATTTACAGCAACAGGGACAATTGAGGCGAAATTCGAGTGTGGATACATAGTCTCAGTGACA GTAGTCCAAAGAGGTCCAGACTTTACGGCCGAGGGCGGGGCCGGAGCAGGAGGAGAGGCAGCAAAAGGGCAGGAGGAGATCCCAACTATCCTAAATCCTA AACCCACCAGGAGTGGCTACAACTTCTTCTTTGCTGAGAAGCACTACAAGCTCAAGTCCTTGTACCCAAACAGGGAAAGAGAGTTCACCAAAATCATTGG ACACTCTTGGAGCAATCTCACTCAAGAGGAGAGAACGGTGTACCAGAACATAGGGATGCAGGATAAAGAAAGGTACAGGAGAGAACTCAAAGAGTACAAG GAGAAGCTCATGGGTGTGGAGATTGGTGAGAGCTCTCATGTGAATGATTTGGATGATTGA
AA sequence Show only first row Show all	>Lus10005636 pacid=23157221 polypeptide=Lus10005636 locus=Lus10005636.g ID=Lus10005636.BGIv1.0 annot-version=v1.0 MSPAAKKMPVEERYPSPLASHEDVFKNALASHEDVVKDAKLFWDTLQKFHSQIGTKFMVPPPPPASPLKWRNSSIKFCGLVCFLYQVVAEKKWREVGIVF QFSPTTTSASFVLRKHYLNILYHYEQVHLFRIQGPIFHPTATFPANGSSSSRSELDIVEYPATKLPADLPAKEGVGGESTFTATGTIEAKFECGYIVSVT VVQRGPDFTAEGGAGAGGEAAKGQEEIPTILNPKPTRSGYNFFFAEKHYKLKSLYPNREREFTKIIGHSWSNLTQEERTVYQNIGMQDKERYRRELKEYK EKLMGVEIGESSHVNDLDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76110	ARID		HMG (high mobility group) box ...		Lus10005636 [exp]	0	1
AT1G76110	ARID		HMG (high mobility group) box ...		Lus10021228 [exp]	3.6	0.8582
AT5G55570			unknown protein		Lus10028870 [exp]	18.5	0.8178
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10016451 [exp]	19.4	0.7805
AT1G64680			unknown protein		Lus10001667 [exp]	22.2	0.8381
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10026322 [exp]	23.2	0.8343
AT5G23060		CaS	calcium sensing receptor (.1)		Lus10009609 [exp]	36.1	0.8200
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10022891 [exp]	43.4	0.7917
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10002563 [exp]	43.6	0.8161
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Lus10038093 [exp]	52.5	0.8005
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033786 [exp]	63.5	0.7862

Compare expression of checked genes

Lus10005636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.